Pseudomonas siliginis: NF676_06080
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Entry
NF676_06080 CDS
T08569
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psii
Pseudomonas siliginis
Pathway
psii03030
DNA replication
psii03430
Mismatch repair
psii03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NF676_06080 (dnaE)
03430 Mismatch repair
NF676_06080 (dnaE)
03440 Homologous recombination
NF676_06080 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psii03032
]
NF676_06080 (dnaE)
03400 DNA repair and recombination proteins [BR:
psii03400
]
NF676_06080 (dnaE)
Enzymes [BR:
psii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NF676_06080 (dnaE)
DNA replication proteins [BR:
psii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NF676_06080 (dnaE)
DNA repair and recombination proteins [BR:
psii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NF676_06080 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
UST80887
LinkDB
All DBs
Position
1283713..1287234
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKALTAMNMPAVAVTDQNNMCSLVKFYKNAMGAG
IKPICGADLWLANKDPDAPLSRLSLLVMNAQGYRNLTELISRGFIEGQRNGMVIVEREWV
AEANEGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYLEIQRTNRPNDEEQ
LHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQYLK
SAEEMLELFSDIPDAIENTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFEGL
EERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDKPTYQ
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYDGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTVNDDGRIVYGLGAI
KGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEQ
KAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYASHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
VKRVMSMEDARTNLAESLRLKLHTQDLKGDQLRWLGELLKRHRGACPVTMEYTSPDAKTL
LQFGETWRIDPADTLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcatctacgcctgcacactgaatactccctggtcgacgggctg
gtgcggatcaagccgctggtcaaggcgctgaccgccatgaacatgccggcggtcgcggtc
accgaccagaacaacatgtgttccctggtcaagttctataaaaacgccatgggcgccggc
atcaagccgatctgcggcgccgacctgtggctggcgaacaaggacccggatgcaccgctg
agccgcctcagcctgctggtgatgaacgctcagggttatcgcaatctcaccgaattgatc
tcgcgtggcttcatcgaaggccagcgcaacggcatggtcatcgtcgagcgcgagtgggtg
gccgaggccaacgaaggtttgatcatgctgtccgccgccaaagaaggcgagatcggcatg
gccatgatcggcggcaatccggcggaagccgaagcgctggcgcgcgagtggatggcggtg
ttcccggatcgcttctatctggaaatccagcgcaccaaccgccccaacgatgaagaacag
ctgcacggcgccgtggcactggccgacaagcttggcgcaccgctggtggcgaccaacgat
gtgcgtttcatcaagcaggaagacttcgccgcccacgaaactcgtgtgtgcatcggtgag
ggccgcgccctcgatgacccgcgtcgttcgaagaattacagcgatcagcaatacctgaaa
agcgccgaggaaatgctcgagctgttcagcgatattcccgacgccatcgaaaacaccgtc
gagatcgccaagcgctgcaacatcgaagtgaagctgggcacacacttcctgcccaacttc
ccgattcccgatggcatgaccatcgacgaatatttccgcaaggtctccttcgaaggtctc
gaagaacgcttggctgtgctgctgcccaaagacactactgaagactacgaagccaagcgt
caggtctacgtcgaccgcttgaatttcgagctggatatcatcatccagatgggcttcccc
ggttacttcctgatcgtgatggactttatccagtgggccaagaacaacggcgttccggta
ggtcctggccgtgggtcgggtgccggatcgctggtggcttacgtacagaagatcaccgac
ctcgacccgctggaatatgacctgctgttcgaacgtttcctcaacccggaacgggtttcc
atgcccgacttcgacgtcgacttctgcatggacggtcgtgaccgggtgatcgattacgtg
gccgaaaagtacggccgcaacgcggtgagccagatcatcaccttcggttccatggccgcc
aaggctgtggtccgtgacgtggcgcgggtgcagggcaagtcctatggcctggcggatcgt
ctgtcgaagatgattccgttcgaagtcggcatgaccctggaaaaagcctacgaacaggaa
gaaatcctgcgcgacttcatcaaggtcgatgaagaagcagcggaaatctgggagatggcg
cgcaagcttgagggcgtggtgcgtaacgtcggcaagcacgccggtggtgtggtgatcgca
ccgaccaaactcaccgacttctcgccgatctattgcgacgaggccggtgacggtctggtg
acccagttcgacaaggacgacgttgaggccgccggtctggtgaagttcgacttcctcggc
ctgcgtaccctgacgatcatcgactgggcgctgaaaaccatcaaccgcgaccgcgccaag
gtcaacgagccgccgctggatatcgcctttatcccgctcgacgacaagccgacctatcag
ttgctgcaaaaagccgaaaccacggcggtgttccagcttgaatcccggggcatgaaagag
ctgatcaaaaagctcaagcccgactgcctggaagacttgatcgcactcgttgcactgttc
cgtcccggtccgctgcaatcgggcatggtggacgacttcatcaaccgtaagcacggtcgc
gccgaactggcctatccgcactcggactaccagtacgacgggctcaagccggtactggcg
ccgacttacggcatcatcctgtatcaggaacaggtgatgcagattgcccaggtcatggcc
ggttacaccctcggcggtgcggacatgctgcgtcgggcgatgggtaagaaaaagcccgaa
gaaatggccaagcagcgcggcggcttcatcgagggctgcgcgaccaacgggatcgacgcg
gatcttgccggtaacattttcgacctggtggaaaaattcgccggttacggcttcaacaag
tcccactccgccgcttacggcctggtgtcataccagaccgcttggctgaaagctcactac
ccggcgccgttcatggccgcggtactttcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcggacgatgaagctgcgtctcgacgcgccggacgtgaacact
tcggagttcaagttcacggtgaacgacgacggccgtatcgtttatggcctcggcgcgatc
aagggtgtcggtgaaggtccggtggaagcgatcaccgaagcgcgacaggccggtccgttc
aaggatctgttcgatttctgcgcgcgggtcgacctcaagcgcatcaacaagcgcaccctc
gatggactgatccgcagcggtgcgctggatcgcctcggcccgtatttccacgacgaacaa
aaggcctatcaggccaacatcgaccgtaaccgcgcggtattgctggcggcgatggaagag
gcgatcaaggcggccgagcagaccgcgcgaacccacgacagtggccacgccgacctgttt
ggcggcttgttcgtcgaagaagacgccgacgtttacgcgtctcatcgcaaagccaaggaa
ctgaccctcaaggaacgcctcaagggtgaaaaagacaccctgggcctgtacctgaccggt
cacccgatcgacgaatacgaaggcgaaatccgccgcttcgcccgtcagcgcatcatcgac
ctgaaaccggcgcgcgatacgcagacggtggcggggatgatcattgccctgcgggtgatg
aagaacaagaagggcgacaagatgggcttcatcaccctcgacgaccgctccggacggatc
gaagcgtcgctgtttgccgatgcgttccattcggcgcagtcgctgctgcagaccgacgcg
atggtggtggtcgaaggcgaggtcagcaatgacgacttctccggcggcctgcgcctgcgg
gtcaagcgcgtgatgagcatggaagatgcgcgcaccaatctggccgagagcctgcgcctg
aagctgcacacccaggatctgaaaggcgatcagctacgctggttgggcgaactgctcaag
cgtcatcgcggcgcgtgcccggtgaccatggagtacaccagcccggatgcgaagaccttg
ctgcagttcggcgagacctggcggatcgacccggcggataccttgattcaagccctgcgt
gaccagttcgggcgagacaacgtcttcctccaataccgttga
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