Pseudomonas siliginis: NF676_07355
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Entry
NF676_07355 CDS
T08569
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
psii
Pseudomonas siliginis
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psii03016
]
NF676_07355 (rnd)
Enzymes [BR:
psii01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NF676_07355 (rnd)
Transfer RNA biogenesis [BR:
psii03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NF676_07355 (rnd)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
UST81127
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All DBs
Position
1545340..1546473
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AA seq
377 aa
AA seq
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MAIDIHWIRDNESLAQFCAEWQQLPFVALDTEFMRVDTFYPIAGLLQIGDGKRAYLIDPL
TINAWQPLAELLENPAVLKVLHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGFSMGY
SRLVQEVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVFVELRPKLSDDKFAWV
LEDGAELVANLRRETDPYEVYREAKLAWKLSRAQLAVLRELCAWREKEARARDLPRNRIV
REHSLWPLARTQPDNLAALGKIEDMHPRTVRQDGQFLLDLIKRSGSVGPDQWPPAVPEPL
PIEAAALIKQLRALGQAEAERLGIAPELMLRKKTLEALVKSGFPEGPYQLPDSLRGWRRE
LLGQKLLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggctatcgatattcactggattcgcgacaacgaaagcctcgcgcagttttgcgccgag
tggcagcagctgccgttcgttgccctcgacaccgaattcatgcgggtcgacaccttctat
ccgattgccggcctgttgcagatcggcgacggcaaacgcgcctacctgatcgacccgctg
accatcaacgcctggcaaccgctggccgagttgctggaaaacccggcggtgctgaaagtc
ctgcacgcctgcagcgaagacctcgaagtactgttgcgcctgaccggcagcctgccggcg
cctctgttcgacacgcaactggccgccgcttacctgaacctcggcttttcgatgggctac
tcgcgtctggtgcaggaggtgctcggcatcgacctgccaaagggcgaaacccgttccgac
tggttgcagcgcccgctgtccgaaacccagatcagctatgccgccgaagatgccgtgcat
ctggccgaggtgttcgtcgagttgcggcccaagctgtccgacgacaagttcgcctgggtg
ctggaggatggcgccgaactggtcgccaacctgcgccgcgaaaccgatccttacgaggtg
tatcgcgaggcgaaactggcatggaagttgtcccgtgcacaactcgccgtgctgcgtgag
ctgtgcgcctggcgcgaaaaagaagcccgcgcccgcgacctgccgcgcaaccgcatcgtc
cgtgaacactcgctgtggcccttggcccgcacgcagccggataacctcgcggcgctgggc
aagattgaagacatgcacccgcgtaccgtacgtcaggacggtcagtttctgcttgatctg
atcaagcgctctggcagtgtggggccagatcaatggccgccggcagtgccggagccgttg
ccgatcgaagccgctgcgctgatcaagcaactgcgcgcgctgggtcaggccgaggccgaa
cgcctgggtattgccccggaactgatgctgcgcaagaaaaccctcgaagccctggtcaaa
agcggcttccccgaggggccttaccaattgcccgattcgctgcgtggctggcgccgcgaa
ttgctcggccagaagctgctcgacagcctggccaccgccggagaacagccttga
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