Pseudomonas siliginis: NF676_10415
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Entry
NF676_10415 CDS
T08569
Symbol
rtcR
Name
(GenBank) RNA repair transcriptional activator RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
psii
Pseudomonas siliginis
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psii03000
]
NF676_10415 (rtcR)
Transcription factors [BR:
psii03000
]
Prokaryotic type
Other transcription factors
Others
NF676_10415 (rtcR)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA
Mg_chelatase
AAA_16
AAA_22
NACHT
AAA_30
AAA_2
AAA_7
MCM
AAA_19
bpMoxR
AAA_14
BrxC_BrxD
ATPase_2
AAA_33
TniB
ABC_tran
IstB_IS21
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
UST82419
LinkDB
All DBs
Position
complement(2226534..2228138)
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AA seq
534 aa
AA seq
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MPNKRTVAIGFIGATLDRVGKGASRWNYWRPSVGLCQQTDLPIHRLELIHGLDARDVSLA
ERVRADIQQISPSTEVRLHPMSLRNPWDFEEVYGALHDFTTAYNFDTEHEDYLVHITTGT
HVAQICWFLLTEARYLPARLIQTSPAKRKNENEPACGTHALIDLDLSRYDRIASRFASKR
LEGLEFLKSGIATRNPAFNRSIEQIERVALRSKAPMLLIGPTGAGKSFLARRIYELKRNR
HQMQGRFVEVNCATLRGDGAMSALFGHVKGAFTGAQNARDGLLRAANGGMLFLDEIGELG
ADEQAMLLKAIEEKRFFPLGSDKEVESDFLIIAGTHRDLRSRVAEGLFREDLYARINLWT
FDLPGLAGRREDIEPNIDFELERHAREHGQRARFNLEARRRYLAFASSREAAWLGNFREL
SASITRMATLAESGRIDEAQVDDEIDRLRYAWGLAQPTAVSTELPGDSESMDLFDRLQLK
AVIEVCRQADSLSDAGRQLFGISRQAKAQPNDADRLRKYLARFGLEWGKLVDTK
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaaacgcacggtcgccatcggatttatcggagccaccctggatcgtgtcggc
aaaggtgccagccgatggaattattggcgaccaagcgtaggcctgtgccaacaaacagac
ctccctatccaccgacttgaattgattcatggcctcgacgcgcgcgacgtcagcctcgcc
gagcgtgtccgagcggacatccagcagatttctccgagcaccgaagtgcgcctgcatcca
atgtcgctgcgcaacccttgggatttcgaggaggtgtacggcgccctgcacgacttcacc
actgcgtacaattttgacaccgagcacgaggattacctcgtccacatcaccaccggcacc
cacgtcgcacagatctgctggtttctgctcaccgaggcgcgctatctgccggcccgattg
atccaaacctcccccgccaagcgcaagaacgagaacgagcccgcctgcggcactcatgcg
ctgatcgatctcgatctgtcgcgctatgatcggattgcctcacgcttcgccagcaaacgt
cttgaaggcctggaatttctcaagtccggcatcgccacgcgcaacccggccttcaaccgc
tccattgaacagatagagcgcgtagccctgcgctcaaaagcccccatgctgctgatcggc
ccgaccggcgccggcaaatccttcctggcgcgacgcatctacgaactcaaacgtaaccgt
catcaaatgcagggacgctttgtcgaagtcaactgtgcaaccttgcgtggcgacggcgcg
atgtcggccttgttcggccacgtcaaaggcgccttcaccggcgcgcaaaacgctcgcgat
ggcctgctgcgcgccgcaaacggcggcatgctgtttctcgatgaaatcggcgagctcggc
gcagacgaacaagcgatgctgttaaaggcaatcgaagagaaacgcttcttcccgctgggc
tcggacaaggaagtcgagagtgattttctgataatcgccggcacccaccgcgacctgcgc
agccgcgtcgccgaaggcctttttcgcgaggacctgtacgcaaggatcaacctctggaca
ttcgacctgcccggcctcgccggccgccgcgaggacatcgagccaaacatcgatttcgaa
ctggaacgccacgcgcgcgaacatgggcaacgcgcgcgtttcaatctcgaagcacgccga
cgctacctggccttcgccagctcacgtgaagcagcgtggctgggcaactttcgcgaactg
tccgcgtcgattacacggatggcaactctggccgaaagcggacgcatcgatgaagcgcag
gtagacgatgagatcgatcgattgcgatatgcatggggcttggcgcaacccactgcggta
tcaactgagttgccgggagatagcgagagcatggacttgttcgatcgcttacagctgaag
gcggttattgaggtatgccggcaggcggacagcctgtcggatgccggtcgacagctgttc
ggcatttcccggcaggccaaggcgcagcctaatgatgccgatcgcttgaggaagtacctg
gcgcggttcggacttgaatggggcaagttagtggacacgaagtga
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