Pseudomonas siliginis: NF676_15010
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Entry
NF676_15010 CDS
T08569
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psii
Pseudomonas siliginis
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psii03032
]
NF676_15010
03400 DNA repair and recombination proteins [BR:
psii03400
]
NF676_15010
Enzymes [BR:
psii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NF676_15010
DNA replication proteins [BR:
psii03032
]
Prokaryotic type
DNA Topoisomerases
NF676_15010
DNA repair and recombination proteins [BR:
psii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NF676_15010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
UST77483
LinkDB
All DBs
Position
3266037..3267074
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AA seq
345 aa
AA seq
DB search
MPDTVLTDALPADLHYVDDTQPGITRKKLRGKFVYFEPSGQRITDPEEIKRINALAVPPA
YTDVWICADPRGHLQATGRDARGRKQYRYHARWREVRDADKYSRLREFGLALPKLRRQLE
ALLDAPGFSRDKVMATVITLLDATLIRVGNTQYARDNRSYGLTTLRSRHVEVNGSAILFQ
FRGKSGIEHQITVKDRRLARIIKRCLEIPGQNLFQYLDEHGERHTVTSSDVNAYLQKLTG
AEFTAKDYRTWAGSALALAVLRELQHESETEAKRHVVEAVKNVAKQLGNTPAVCRKCYIH
PAVLEHFMLGALAELPRPRVRKGLRAEEVALAMFLERMCEVSEAS
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgcccgataccgtgctgacagatgccctgcccgccgatctgcattacgtcgatgacact
cagcctggtatcacccggaaaaaactgcgcggcaagttcgtctatttcgaaccgtcgggc
cagcgcatcaccgacccggaggaaatcaaacgcatcaatgccctggcggtgccgccggct
tacaccgatgtgtggatctgcgccgacccgcgcggtcatctgcaagccaccggccgcgat
gcgcgcgggcgcaagcagtaccgttatcacgcgcgctggcgcgaagtgcgcgacgccgac
aaatactcgcgcctgcgcgagttcggcctggccttgcccaaactgcggcgccagcttgag
gcgctgctcgacgccccgggcttcagccgcgacaaggtcatggccacggtcatcaccctg
ctcgacgccacgctgatccgcgtcggcaatacccaatatgcgcgggacaatcgctcttat
ggcctgaccacgttgcgcagtcggcatgtcgaggtcaacggcagcgcgatcctgttccag
ttccgtggcaagagcggcatcgagcaccagatcaccgtcaaggatcggcgtctggcgcga
atcatcaagcgctgcctggagattcccgggcaaaacctgtttcagtaccttgacgaacac
ggcgaacggcacactgtcacctcctccgacgtcaacgcctatctgcaaaagctcacgggc
gctgaattcaccgccaaggactaccgcacctgggcgggcagcgcattggctttggcagtg
ctgcgcgagttgcagcatgagtcggaaaccgaggccaagcgccatgtggtcgaagcggtg
aagaacgtcgccaaacagctgggcaacacgccggcggtgtgccgcaaatgctacatccac
cctgcggtgctcgaacatttcatgctcggcgcgctcgccgaactgccccgcccgcgcgtg
cgcaaaggcctgcgcgctgaggaagtagccttggcgatgtttctcgagcggatgtgtgag
gtgagcgaggcgtcctga
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