Pseudomonas siliginis: NF676_16250
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Entry
NF676_16250 CDS
T08569
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
psii
Pseudomonas siliginis
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
psii01002
]
NF676_16250
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
psii01011
]
NF676_16250
Peptidases and inhibitors [BR:
psii01002
]
Cysteine peptidases
Family C82
NF676_16250
Peptidoglycan biosynthesis and degradation proteins [BR:
psii01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
NF676_16250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
UST77715
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All DBs
Position
complement(3542781..3544397)
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AA seq
538 aa
AA seq
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MFKKYACYLSICLLAAPFVACADEPLPPLETLPTPETQLPVEPRSPLQAVLISLAQSCPA
IAPRLNGPALSQLQAFYEQQDWMPVWASESARLPALRAQLQLLADDGLNPNRYAVATTPP
QDGELCADIDISRNYLQALQDLHYGRLLQSHFEPLWRVDGPPTDRQAQLLSIAVPGMNDI
AAAFNLARPHLPQYQSLRQLYAAQRLQALPQWQPVGNGPLLRPAMEDPRVPELARRLYSE
GYLAHALVTPDNAYDDVLVEAVKHFQASHSLQADGVVGPGTIAELNISPLTRRDQLRVNL
ERFRWMAQDMEPSGLVVNVAAAELTLYQGGQPVWQTRTQVGRAERQTPLLKSRVTRLTLN
PTWTVPPTIWKEDKLPEIRKDQTFLSRQNLQVLDANGQPLAAADIDWDNPGNILLRQDAG
PRNPLGQMVIRFPNPFSVYLHDTPSKALFDKGPRAFSSGCVRVEHPLQLRDLLLSPAEKA
RTETLLATGTTHEFRLSAPVPILMTYWTAQVDSSGQVRYAPDIYSHDSALLAGLDRAH
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
ttgttcaaaaagtacgcatgctacttgagcatttgtttgctcgctgcgccgtttgtcgct
tgcgccgatgagccgctgcccccgctcgaaaccctgccgacgcctgaaacgcaattgccg
gtcgagccgcgcagcccgttgcaggcagttttgatcagcctggcgcagtcgtgcccggcc
attgcaccgcgcctcaatggcccggcgttgagccagttgcaggcgttttatgagcagcag
gactggatgccggtgtgggcaagtgagtccgcacgcttgccggcattgcgcgcgcaattg
cagctgttggccgacgacgggctaaatccgaatcgctatgcggtcgcgacgacaccgccg
caggatggcgagttgtgtgccgacatcgacatcagccgcaactatctgcaggccttgcag
gatctgcattacggccgtctgttgcaatcgcatttcgaaccgctgtggcgtgtcgacggc
ccgccgaccgatcgtcaggcgcaattgctcagcattgccgtgccgggcatgaacgatatc
gctgcggcgttcaacctggcgcgtccgcatctgccgcaatatcagagcctgcgtcagctg
tatgccgcgcaacgcttgcaagccttgccgcaatggcagccggtgggcaacggcccgttg
ctgcgtccggcgatggaagacccgcgcgttccggaactggcccgacgcttgtacagcgaa
ggctatctcgcacatgcactggtgacgccggacaacgcctacgatgacgtgctggtggag
gcagtgaaacactttcaggccagccattcgttgcaggctgacggcgtggtcgggccgggc
accattgccgagctgaacatcagcccgctgacccgccgcgatcagttgcgcgtcaatctc
gaacgtttccgctggatggcccaggacatggagcccagtggcctggtggtcaacgtggcc
gccgctgagctgacgctgtatcagggcggtcagccggtatggcagacccgcacccaggtc
ggccgcgccgaacgccagacgccgctgctcaaatcccgcgtcacccgcctgacgctgaac
ccgacctggacggtgccgccgactatctggaaggaagacaagctgccggaaatccgcaag
gaccagaccttcctcagccgccagaatctgcaagtgctcgacgccaacggccagcctctg
gcggcggcggatatcgactgggacaaccccggcaacatcctcctgcgccaggacgccggc
ccgcgcaatccgctggggcagatggtcatccgtttccccaacccgttttcggtgtacctg
cacgacacgccgagcaaggcgctattcgacaaaggcccacgggcgttcagttccggttgt
gtgcgggtcgagcacccgctgcaactgcgcgatctgctgctgtccccggcggaaaaagct
cgcaccgagactttgctggcaaccggcaccacccatgaatttcgcctgtcggcgccggtg
ccgatcctgatgacctactggacggcgcaagtcgacagcagcggccaggtgcgttatgcg
ccggacatctacagccacgacagcgcattgctggcggggctggatcgggcgcattga
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