Pseudomonas siliginis: NF676_18420
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Entry
NF676_18420 CDS
T08569
Name
(GenBank) DEAD/DEAH box helicase
Organism
psii
Pseudomonas siliginis
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SWIM
Motif
Other DBs
NCBI-ProteinID:
UST78133
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All DBs
Position
complement(4000394..4003687)
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AA seq
1097 aa
AA seq
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MSIFIERLKGLTWTHAFSSKALAKARAYAADDRVEILEIDDRKIEAFCVGSQLQAYEQSI
YLSEDRLGSVNLRCLCSCPVAIDCKHSAAVIYHLLGTGEDASDNDAQIPLGRALEHWLST
IPVPAKPADESAQTAGTRLFYKLKSTSANGKWLLDIFKVYQLKSGELREVKPMYSLAEML
MRQPGYLSELDLRIARLLVAMHSHHAYYSGYPLEGSSGAELLEMLLRTSRLFLDFEDLRA
LTPGAKRVGQFSWAEQADGGFRARWSSAEAAQETVLALEPLYYLDREQRQVGPLFTELEE
KLACHLTQAPDIPARQAMQFSHRMSAMTQIAPPHKLTERIIDDVLPQPQLTLVSGRERSR
WEYVLEHRAALLFTYNGHPAVDRNPEVMILNGSETQRIQRQPALEKKLRQNLQKHGFKKA
TRKSAMDRPGEMFTLPDDSAWLGFMHEGLATLRAADWKIEISPGFHFDVQPVEQWYAEVE
EEATHQWFDLQLGIVVNGERYSLLPILLHLLRTQPRLLDPVNLAQRSDDEKLLIELKPSG
FGDPAGAKVALPLSRVKPLMATLGELYLGGHQGDALRLTAPDAARLSMLDGVPLDWQGGE
RLRTFAKRLQNSSHAQVAAPAGLNAQLRPYQLEGLNWMQTLRELEVGGILGDDMGLGKTL
QTLAHLLTEKHAGRLDCPALAVMPTSLIPNWLDEAERFTPQLKVLALHGTGRQKDFANLA
EYDLVLTTYALLPRDLEILQPQPWSVLILDEAQNIKNPLSKAAQAARDLQARQRLCLSGT
PLENHLGELWSQFHFLMPGWLGDSKSFNRDYRTPIEKHGNVQRMQHLTARIKPFLLRRKK
DQVATELPPKTEIIHWVELSDGQRDVYETVRVAMDKKVRDEIARSGVARSQIIILDALLK
LRQVCCDLRLVNMPLTAKALRSGSGKLISLMEMLEELLGEGRRILLFSQFTSMLALIEQE
LQQRGLAYSLLTGDTTDRRTPVRDFQGGKVPLFLISLKAGGTGLNLTAADTVIHFDPWWN
PAVENQATDRAYRIGQNNPVFVYKLIAKGTVEEKIQALQQEKAALAGAVLEGGTTGGFKL
EQSDIEALFAPLPVSKG
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgagcattttcatcgagcggcttaaagggctgacatggacccacgcattcagtagcaag
gcgttggccaaggcccgcgcttatgccgccgatgaccgggtagagatcctcgagatcgat
gacaggaagatcgaggcgttctgcgtcggttcgcaacttcaggcgtatgagcaaagcatt
tatctgtccgaagatcggctggggtcggtaaacctgcgttgcctgtgcagctgtcctgtt
gcaatcgactgtaagcacagcgcggcggtgatctatcacctgctgggcacgggtgaggat
gcgtctgacaatgatgcacagatcccgttggggcgagcgctcgagcattggctttcgaca
attcccgtgccggccaagcctgctgacgaaagtgcgcaaaccgcaggcacgcgtctgttt
tacaagctcaaatcgacgtctgcgaacggcaagtggctgctcgatatcttcaaggtctac
cagctcaagagcggcgagttacgcgaggtcaaaccgatgtactcgctcgcggaaatgctc
atgcgccagccgggctacctgtccgaactggatctgcgcatcgcccggctgttggtcgcc
atgcattcccatcacgcctattacagcggctatccgctggaaggcagcagtggcgccgaa
ctgctggaaatgctcctgcgtacctcgcggctgttcctcgacttcgaagacctgcgagcg
ctgacaccgggggcgaaacgcgtcggtcagttctcttgggccgagcaggctgacggcgga
ttccgcgcgcgatggagcagtgccgaagccgcgcaggaaaccgtgctggcgctggagccg
ctttattaccttgatcgcgagcagcgccaggttggcccgctgttcactgagctggaagaa
aaactcgcctgccatttgacccaggcgccagacatcccggcgcgtcaggccatgcagttc
agtcatcgcatgagcgcgatgacccaaattgcgccaccgcacaaactcaccgaacggatc
atcgatgacgtgctgccgcagccgcaactgaccctggtcagcggccgagaacgctcgcgc
tgggaatatgtgctggagcaccgcgccgctctgctgtttacctacaacggtcatccggcg
gtggatcgcaacccggaagtgatgatcctcaacggcagcgaaacccagcgcattcagcgt
caaccggcgctggaaaagaagctgcgccagaacctgcaaaaacatggcttcaagaaagcc
acgcgcaagagtgcaatggatcgtcccggcgagatgtttaccttgccggatgattccgcc
tggctcgggttcatgcacgaagggctggccacactgcgcgccgcagattggaaaatcgag
atcagtcccggtttccatttcgatgtacaaccggttgaacagtggtacgccgaggtcgaa
gaagaggccacgcatcagtggtttgatctgcagttgggtatcgtcgtcaacggcgagcgc
tacagcttgctgccgatccttctgcacctgttgcggacccagccgcgcttgctcgacccg
gtcaatctggcgcagcgcagcgatgatgaaaaactcctgatcgagctcaagcccagcggt
tttggcgacccggccggcgccaaggtcgcgttgccgctgagtcgggtcaaaccgctgatg
gcgacgctgggcgagctgtatctgggcggacaccagggcgatgcactgcgcttgaccgct
ccagacgccgcacgcctgagtatgctcgatggcgtaccgctggactggcagggcggcgaa
cgcctgcgcacttttgccaagcgtctgcagaattccagtcacgcccaggttgctgcgccg
gccggcctcaacgcgcaactgcgcccgtatcagctcgaaggcttgaactggatgcagacc
ctgcgcgagctggaggtcggcggcattctgggcgatgacatgggcctgggcaaaaccctg
cagaccctggcgcatctgctcaccgaaaaacacgccgggcgcctggactgtccggcactg
gcggtgatgccgaccagcctgattcccaactggctcgacgaggccgagcgcttcacgccg
cagttgaaagtcctggcgctgcacgggaccgggcggcagaaggactttgccaatctcgcc
gaatacgacttggtgctaaccacttacgcattgctgcccagggatctggagatcttgcag
ccgcagccgtggagcgtgctgattctcgacgaagcgcagaatatcaagaacccgctgagc
aaagccgcgcaggccgcccgtgacttgcaggcccgtcagcgcttgtgtctgagcggtacg
ccactggaaaaccacctcggcgagctgtggtcgcagttccatttcctcatgcccggctgg
ctcggcgacagcaaatccttcaatcgcgattaccgcacacccatcgagaagcacggcaat
gtccagcgcatgcagcacctgaccgcgcgcatcaagccgtttttgctgcggcgcaagaag
gatcaggtcgccaccgagttgccgccgaaaaccgagatcatccactgggtcgaactcagt
gatggtcagcgcgacgtctatgagacggtgcgcgtggcgatggacaaaaaggtccgcgac
gaaatcgcccgcagcggcgtggcgcgcagtcagatcatcatcctcgatgcgctgctcaag
ctgcgccaggtctgctgcgatctgcgcctggtcaatatgccgctcacggcgaaggcgttg
cgctcgggcagcggcaagctgatcagcctgatggagatgctcgaagaattgctcggcgaa
ggtcggcgcattctgctgttctcgcagttcacctcgatgctggcgctgatcgagcaggag
ttgcagcaacgcgggcttgcctactcgttgctgaccggcgacaccaccgatcggcgcacg
ccggtgagggatttccagggcggcaaggtgccgttgttcctgatcagcctcaaggccggg
ggcactggtctgaacctgacggcggcagacacggtgattcacttcgatccttggtggaac
ccggcggtggagaatcaggcgactgatcgggcgtatcgcatcgggcagaacaatccggtg
ttcgtctacaagttgattgccaaaggcaccgtcgaagagaagatccaggcgttgcagcag
gagaaagcggcgctggccggggcggtgcttgagggtggcacgacgggcggattcaaactg
gaacagagtgatatcgaggcgttgtttgcgccgttgccggtttccaagggttga
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