Pseudomonas siliginis: NF676_18475
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Entry
NF676_18475 CDS
T08569
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
psii
Pseudomonas siliginis
Pathway
psii00071
Fatty acid degradation
psii00280
Valine, leucine and isoleucine degradation
psii00310
Lysine degradation
psii00362
Benzoate degradation
psii00380
Tryptophan metabolism
psii00410
beta-Alanine metabolism
psii00640
Propanoate metabolism
psii00650
Butanoate metabolism
psii00907
Pinene, camphor and geraniol degradation
psii00930
Caprolactam degradation
psii01100
Metabolic pathways
psii01110
Biosynthesis of secondary metabolites
psii01120
Microbial metabolism in diverse environments
psii01200
Carbon metabolism
psii01212
Fatty acid metabolism
Module
psii_M00087
beta-Oxidation
psii_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
NF676_18475 (fadB)
00650 Butanoate metabolism
NF676_18475 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
NF676_18475 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
NF676_18475 (fadB)
00310 Lysine degradation
NF676_18475 (fadB)
00380 Tryptophan metabolism
NF676_18475 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
NF676_18475 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
NF676_18475 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
NF676_18475 (fadB)
00930 Caprolactam degradation
NF676_18475 (fadB)
Enzymes [BR:
psii01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
NF676_18475 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
NF676_18475 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
NF676_18475 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
NF676_18475 (fadB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
UST78143
LinkDB
All DBs
Position
complement(4013035..4015182)
Genome browser
AA seq
715 aa
AA seq
DB search
MIYEGKAITVKALESGIVELKFDLKGESVNKFNRLTLNELRQAVDTIKADASIKGVIVSS
GKDVFIVGADITEFVDNFKLPDAELVAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLE
MCLAADYRVMSTKAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAIEWIAAGKENRPEDAL
KVSAVDAVVAPEKLQEAALELIKRAISGEFDYKAKRQPKLEKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFVKLAKTSAAQSLIGLFLNDQEL
KKKAKAYDEIAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL
LVGRVDKGRMTAAKMAEVLNGIRPTLSYGDFGHVDLVVEAVVENPKVKQAVLAEVEDKVK
EDTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSELAIATTVA
YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDVLYEAKRLGQKNGKGFYAYEADKKGKQ
KKVADPSVLEVLKPIVYEQREVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVY
GIGFPPFRGGALRYIDSIGVAEFVALADQYADLGALYHPTAKLREMAKNGQSFFG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatttacgaaggtaaagccatcacggttaaagctcttgaaagtggcatcgtcgaattg
aaattcgacctcaagggtgagtccgtcaacaagttcaaccgtctaaccctgaacgaactg
cgtcaggccgtagacaccatcaaggcagatgcttcgatcaagggcgtgatcgtcagcagc
ggcaaggacgtgttcatcgtcggcgccgacatcaccgaatttgtcgacaacttcaagctg
ccggatgccgagctggttgcaggcaatctcgaagccaacaagatcttcagcgatttcgaa
gacctcaacgtgccgaccgtcgcggccatcaacggcatcgccctcggtggcggtctggaa
atgtgcctggcggcggactatcgcgtcatgtccaccaaggccaagattggtctgccggaa
gtgaaactgggcatctacccgggcttcggcggtaccgtacgcctgccacgcctgatcggt
gtcgacaacgccatcgagtggattgccgccggcaaggaaaaccgccctgaagacgcgctg
aaagtcagcgccgtcgacgccgtagtcgcccctgaaaaattgcaggaagctgcccttgag
ctgatcaagcgcgccatctccggcgagttcgattacaaggccaagcgtcagccgaaactt
gaaaaactcaagttgaacgccattgagcaaatgatggctttcgaaaccgccaaaggtttc
gtggctggccaggccggcccgaactacccggcgccggttgaagcgatcaagaccatccag
aaagccgcgaacttcggtcgcgacaaagcgctggaagtggaagctgcaggcttcgtcaaa
ctggccaagacctctgccgcacagagcctgatcggcctgttcctgaacgatcaggagctg
aagaaaaaggccaaggcctacgacgaaatcgccaaagacgtgaagcaggctgccgtactc
ggcgccggcatcatgggtggcggtatcgcttatcagtcggcctccaaaggcacgccgatc
ctgatgaaggacatcaacgagcacggtatcgagcagggtctggccgaagccgccaagctg
ctggtcggccgtgttgacaagggtcgcatgaccgcggcgaagatggctgaagtgctcaac
ggcattcgtccgaccctgtcctacggcgacttcggtcacgtcgatctggtcgtcgaagct
gtggtcgaaaacccgaaggtcaagcaagcggtactggctgaagtcgaagacaaggtcaaa
gaggacaccatcctcgcgtccaacacctcgaccatttccatcagcctgctggccaaggcc
ctcaagcgtccggaaaacttcgtcggcatgcacttcttcaacccggtgcacatgatgccg
ctggtggaagtgatccgtggcgagaagtccagtgaactggcgatcgccaccaccgttgcc
tacgcgaagaaaatgggcaagaacccgatcgtcgtcaatgactgcccgggcttcctggtc
aaccgcgtgctgttcccgtacttcggcggtttcgccaagctggtcagcgccggtgtcgac
ttcgttcgcatcgacaaagtgatggaaaaattcggctggccaatgggcccggcttacctg
atggacgtggtcggcatcgacaccggtcaccacggtcgcgacgtcatggctgaaggtttc
ccggatcgcatgaaggatgaccgtcgttcggccatcgacgtgctgtacgaagccaaacgc
ctgggccagaagaacggcaagggcttctacgcctacgaggccgacaagaaaggcaagcag
aagaaagtcgccgatccgtcggtactcgaagtgctcaagccgatcgtttacgagcagcgc
gaagtcactgacgaagacatcatcaactggatgatgatcccgctgtgcctggaaaccgtg
cgctgcctggaagacggcatcgttgaaaccgccgccgaagccgacatgggtctggtctac
ggtatcggtttccctccattccgtggcggtgcgctgcgctacatcgattcgatcggtgtt
gccgagttcgttgccctggctgaccagtacgctgatttgggcgcgctgtaccacccgacc
gcgaagctgcgcgaaatggccaagaacggccagagcttcttcggttaa
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