Pseudomonas siliginis: NF676_18970
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Entry
NF676_18970 CDS
T08569
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psii
Pseudomonas siliginis
Pathway
psii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NF676_18970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psii03019
]
NF676_18970
03009 Ribosome biogenesis [BR:
psii03009
]
NF676_18970
Enzymes [BR:
psii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NF676_18970
Messenger RNA biogenesis [BR:
psii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NF676_18970
Ribosome biogenesis [BR:
psii03009
]
Prokaryotic type
rRNA helicases
NF676_18970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
UST78235
LinkDB
All DBs
Position
complement(4129752..4131425)
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPST
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGELLDRLTADIGCTPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERSGDRPDRGDRERRAPMPLGEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEEGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggattcgccgcttttaatctcaacccgaatattcttgcagcc
gtcgcagcgactggctacgaagagccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccaggacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttc
gcactgcctattctgcaccgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaacccgagagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccaggcgtcaccgtcgtggctgtctacggcggcgcgccgatgggcccgcaactcaag
gcaatccgtaatggcgcacagattgttgtcgctactccgggtcgtctgtgcgaccacctg
cgtcgcgacgagaaagtcctgtcgaccgtgaaccatctggttctcgacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggctctgccatcgacc
cgccagaccgtgctgttctcggcgaccctgccgcagtcgatccgcgccattgctgaacgc
cacctgcgcgatccgcaacacgtcaagatccagaccaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaaaacctcggccgtactcagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctcgacgccaaaggctacaaagccgccgcgttgaacggtgacatcgcc
cagaaccagcgtgagcgcgtcatcgactcgctcaaggatggccgtctggacatcgttgtc
gccaccgacgttgctgcccgtggtctggacgttccgcgcatcactcacgtattcaacgtc
gacatgccgtacgatccggaatcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgcgtaaccggtcagaaagttgccgaagtacgcctgccagacgctcaagccgttctc
gatgcacgcatcaagaaactgaccaacagcctgtcgccgctggttgctgatgccgagtcg
actcacggcgaactgcttgatcgcctgactgccgacatcggttgcaccccgcgtgcactg
gctgctgcgctgctgcgcaaggccaccaatggtcaagcgctgaacctggcagcgatcgag
aaggaacgtccactggtgccgaacaacgcgccgcgtggcgaccgtcctgagcgttccggt
gatcgtcctgatcgtggtgaccgcgagcgtcgcgcgccaatgcctttgggcgaaggccgc
gctcgttgccgtaccgcgctgggtgcgcgtgacggtatcgctgcgaaaaacctgctgggc
gccatcctcaacgaaggcggtctggcccgtgaagcgatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgagctgccggaagaaggtctggaaaagctcctgaccaagctgaag
gacactcgcgtggctggtaagcagctcaagctgcgtcgctaccgcgaagattga
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