Pseudomonas siliginis: NF676_19800
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Entry
NF676_19800 CDS
T08569
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psii
Pseudomonas siliginis
Pathway
psii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NF676_19800 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psii03019
]
NF676_19800 (rne)
03009 Ribosome biogenesis [BR:
psii03009
]
NF676_19800 (rne)
Enzymes [BR:
psii01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NF676_19800 (rne)
Messenger RNA biogenesis [BR:
psii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NF676_19800 (rne)
Ribosome biogenesis [BR:
psii03009
]
Prokaryotic type
rRNA processing factors
NF676_19800 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
UST78394
LinkDB
All DBs
Position
4304357..4307638
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AA seq
1093 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAATNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAPAAPAPAPAAAPEPSLFKGLVKSLVSLFATKEEPAAPVAVAKPAATERPARNEERRN
GRQQSRNRNGRRDEERKPREDRAPREERAPREPREERQPREAREPRETRSEAPVAREERA
PRAPREERAPRAPREDRKPRGEREERVRELREPLDAAPVAAVAAVTAEERPARQPREERA
PRAPREERQPRAEQAAAAVAEEEVNSNNEEQLPEDGQDNAEGDRPRRRSRGQRRRSNRRE
RQRDANGNVIEGSEESESAENAGEPSTADLAAGLAVTAAVASSTISAPAEAEAHEQAERA
TAATLETAPVEAPVVEATTPVEVTAAPEIEVAPVREAQPQVEAPAEPEAVVEAPVAESEP
ATETVSENVTKTVREVREEQTAFNWVAEPAVTEAPAPVAEAEVPQAMVSEPVVVAAEPAP
EPVVEAPAVEAPVAKAQAEEAPAAVESPAPVVEAPAPVSALTPNGRAPNDPREVRRRKRE
AERLQKEAELAAAAAPVAAEPAAAAEVVEAAPAPVAEEASVEAVIAEAPRSVQDAVEQRE
EAQEKEHEPKPLV
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccgtatcactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gccccagaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgagaaagaagaacgtgggaacaagggcgccgccctgaccaccttcatcagcctg
gccggtcgttacctcgtactgatgccgaacaacccgcgtgccggcggcatctcccgtcgc
atcgaaggcgaagaacgcaacgaactgcgtgaagcgctgaacggtctggttgctccggcc
gacatgggtctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgg
gaccttgattacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgctcc
gcgccattcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtg
ccactgttcaaccgtttccagatcgaaagccagatcgagaccgcgttccagcgcgtcgtc
gaactgccttccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaacagcgctgcagaccaac
cttgaagccgccgaagaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgatatgaccccggcgaagaaccagcgcgccgtggaagagaaagtc
cgtgaatgcctggaagctgaccgcgcccgcgtgcagatcggtcgtatctcgcgtttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatcgctgggcgaaagcagcggcatcgtc
tgcccgcgttgcaacggcaccggcatcatccgtgacgttgaatcgctgtcgctggccatc
ctgcgcctgatcgaagaagaagccctgaaagaccgtaccgccgaagttcgcgcgcaggtg
ccgatcccggtcgctgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgtatcgtcattctgccgaacgatcacctcgagacgccgcacttt
gaagttcagcgtctgcgtgacgacagcccggaagccgcgaccaaccagtccagctacgaa
atcgctgcggccgctgccgaagtcgaagaagtccagccagccgctgcgacccgcactctg
gttcgccaggaagctgcagtgaaaactgcgccggcccgtgccaacgcaccggtgccgact
gaagttgcacctgccgcacctgctccagcaccagctgccgcgcctgagccaagcctgttc
aagggtctggtgaagtcgctggtcagcctgttcgccaccaaggaagagccagccgcaccg
gttgccgttgcgaaaccggctgccaccgagcgtcctgcccgcaacgaagagcgtcgcaac
ggtcgtcagcagagccgcaaccgcaacggtcgtcgtgatgaagaacgcaagccgcgcgaa
gaccgtgctccacgtgaagagcgcgcaccacgcgagccgcgcgaagagcgtcagccacgt
gaagcccgtgagccgcgtgaaacccgcagcgaagcgccggtagcccgcgaagagcgcgca
ccacgtgccccgcgtgaagaacgtgcaccgcgtgcaccgcgtgaagatcgcaagccgcgt
ggcgagcgtgaagagcgtgtgcgtgaactgcgcgagccactggacgccgcgccagtcgca
gccgttgctgccgtgaccgctgaagagcgtccggcccgtcagccacgcgaagaacgcgcc
ccgcgtgcgccgcgtgaagagcgtcaaccgcgtgccgagcaggccgctgctgccgttgct
gaagaagaagtgaacagcaacaacgaagagcaactgccggaagacggtcaggacaacgcc
gaaggcgatcgtccacgtcgtcgctcccgtggccagcgtcgtcgcagcaaccgtcgcgag
cgtcaacgtgatgccaacggcaatgtgatcgaaggttcggaagaatccgagtccgctgaa
aacgctggcgagccaagcactgccgatctggccgctggcctggctgtcaccgctgccgtt
gccagcagcaccatcagcgctccggcagaagccgaagctcacgagcaggctgaacgcgcc
actgccgccacactggaaaccgctccagtcgaagcgccggttgtcgaagccaccactcca
gtggaagtgactgctgcaccggaaatcgaagtcgccccggtccgcgaagctcagcctcag
gttgaagcgcctgccgaaccggaagctgtcgttgaagcgccagttgctgaatccgaacca
gcgaccgaaaccgtcagcgaaaacgtgaccaaaaccgtgcgtgaagttcgcgaagagcag
actgcgttcaactgggttgccgagccagccgtcaccgaagctccagcgccagtcgctgaa
gccgaagtaccgcaggccatggtttccgaaccagtagttgtagcggccgaaccggctcca
gagccagtggttgaagcaccagctgtcgaagcaccagttgcaaaagctcaggctgaagaa
gcaccagccgcagtcgaatcgccagccccggtggttgaagctccggctccggtcagcgcc
ctgacgccaaacggccgtgcgccaaacgacccgcgtgaagtgcgtcgtcgcaagcgtgaa
gccgagcgtctgcagaaggaagccgaactggctgccgctgcagcgccagtggctgccgaa
ccagccgctgcggctgaagtggtcgaggcagcccctgccccggtcgcggaagaagcatcg
gttgaagcggtgatcgctgaagcaccacgctccgttcaggacgcggttgaacagcgcgaa
gaagcccaggaaaaagagcacgagcctaaaccactcgtgtaa
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