Pseudomonas siliginis: NF676_21080
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Entry
NF676_21080 CDS
T08569
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
psii
Pseudomonas siliginis
Pathway
psii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
NF676_21080 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psii03400
]
NF676_21080 (sbcB)
Enzymes [BR:
psii01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
NF676_21080 (sbcB)
DNA repair and recombination proteins [BR:
psii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
NF676_21080 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NF676_21080 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NF676_21080 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UST78629
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All DBs
Position
complement(4579913..4581343)
Genome browser
AA seq
476 aa
AA seq
DB search
MTSIFWYDYETTGINPRNDRPLQVAGIRTDHALNEIDEPVNLYCQPSEDILPHPAACAIT
GITPGQLAEKGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE
WQGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGRVTLKLERLTAANNIDHGHAHEALSDV
RATIALARLIREKQPKLYEWLFQLRSKQKVMDQIRLLQPLVHVSGRFSAARSYVGVVLPL
AWHPKNRNALIVCDLHLDPQGLLDLDAQALRQRLYTRRDELAEGELPVPLKLIHINRCPV
VAPLAVLREQDQQRLGLDMALYHERAVRLTDAQQVWKDKVATIYASEDFVPSEDPEQQLY
DGFIGDRDRRLCEQVRTADPAQLAQEQWPFDDERLPELLFRYRARNFPDTLDVAEQERWK
LFCQQRLTQPEAGAPNTVQSFIEAAEQWSLSATPMQREVLNDWQNYVQALRKRLNL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgacttcaatcttctggtacgactacgaaaccactggcatcaatccgcgcaacgaccga
ccgctgcaggtggccgggattcgcaccgaccatgcgctcaacgaaatcgacgagccggtc
aatctctattgccagcccagcgaggacatcctgccgcacccggcggcgtgcgcgatcacc
ggcatcaccccgggccagctcgctgaaaaaggcctgagcgaagccgacttcatgactcgc
gtacatgcgcaactggccgcaccggggacctgtggcgccggttacaacaccttgcgtttc
gacgacgaaatgacccgctacagcctgtatcgcaatttcttcgacccctatgcccgtgaa
tggcagggtggcaacagtcgctgggatctgattgatgtggtgcgcgccgcttacgcattg
cgccccgatggtctggtctggccgaccgatgatgaaggccgcgtgaccctcaagctcgaa
cgcctcacagcggctaacaatatcgatcacggccatgcccacgaggcgctgtcggatgtg
cgcgccaccatcgcgttggcgcggctgattcgcgagaaacaacccaagctctacgagtgg
ctgttccagttgcgcagcaaacagaaggtgatggatcagatccgcctgttgcagccactg
gtgcatgtgtccgggcgtttctcggcggcacgcagttatgtcggcgtggtgttgccgctg
gcctggcacccgaaaaatcgcaacgccttgatcgtctgtgatctgcatcttgatccgcag
gggttgctggacctcgatgcgcaagccttgcgtcagcgtctttatacccgtcgcgatgag
ttggccgaaggtgagttaccggtaccgctcaagctgattcatatcaatcgttgcccggta
gtggcgccgttggcggtattgcgcgagcaagaccagcagcgccttgggctggacatggcg
ctttatcatgagcgggcagtgcgactaactgacgcacaacaagtctggaaagataaagtc
gcgacgatttatgccagcgaagacttcgttcccagcgaagatcccgagcagcagttgtac
gatggatttatcggtgatcgtgatcgtcgtttatgcgaacaagttcgaacggcggatcct
gcgcagttggcgcaagagcagtggcctttcgatgatgaacgtttgcctgaattacttttt
cgatatcgagcacgcaactttccggacaccctggacgtggccgagcaagagcgctggaaa
ttattttgtcagcagcgccttacgcaacctgaggcaggtgcgccgaataccgtgcagtca
tttatcgaggcggcagagcaatggtcgcttagtgcgacgccaatgcagcgagaggtactc
aatgactggcagaattatgtccaggcattacgcaaacgtttgaatctgtga
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