Pseudomonas siliginis: NF676_23825
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Entry
NF676_23825 CDS
T08569
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
psii
Pseudomonas siliginis
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psii03000
]
NF676_23825
Transcription factors [BR:
psii03000
]
Prokaryotic type
Helix-turn-helix
Other families
NF676_23825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
HTH_8
Sigma54_activ_2
GAF
AAA_5
AAA_2
Enkurin
HTH_23
HTH_7
HTH_50
HTH_30
AAA
PAS_8
HVO_A0261_N
PAS_9
Diguanyl_cycl_sensor
HTH_22
RWP-RK
HTH_AraC
Mg_chelatase
HTH_17
HTH_28
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UST79145
LinkDB
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Position
complement(5186716..5188629)
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AA seq
637 aa
AA seq
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MHDNHLSRHARQVLTVTQGKPHVHGPGADPSIARSWLRCLEDYHLDPSVTMAPTVLEHGR
VLESRERLQQVLQIAGTEMSSLHQQLSGAGHAVLLTDARGVILNCVTAPAERKIFERAGL
WLGADWSEACEGTNGIGTCLVERQALTIHQDEHFRGRHTGLTCSASPVFDPHGELLAVLD
VSSARPDVSRQSQFHTMALVNLSAKMIESCYFLRCFDNQWLLRFHLQAESVGLFSEGLLA
FDGEGRISAVNQSALNLLGHIRGGLLGQPVEAFFDCSLDDLLGRASANASASWPLRTRDG
RHLFAVLRGESRKPTAIVPTPITAPAPRLSGICLGDEALQAEFRKALRVFERDVPLLING
ETGSGKEAFAKAVHQASQRCGNAFVALNCAAIPESLIESELFGYRGGSFTGARKDGMRGK
LQQADGGTLFLDEIGDMPLALQTRLLRVLEDRQVVPIGGEPQAVDVRIISATHRNLLERV
EDGSFREDLYYRLNGLEVALPALRERSDKSQLLDFLLAEEAGGETILIDEAARQALLAFD
WPGNVRQLRNVLRMLAALCDGGRVGVEDLPVMIRQARPAAAPAQIAAQPLDDAERVALLN
ALEQTRWHMTHTAQQLGVSRNTLYRKLRKHGIERRVS
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacaaccatctgagtcgccatgcccgccaggttctcaccgtcacccagggcaaa
ccgcacgtgcacggccccggcgccgatccatcgatcgcccgttcgtggctgcgttgcctt
gaggactatcacctcgatccttctgtgaccatggcgccgaccgtgctcgagcatggccgg
gtgctggaaagtcgcgaacgtctgcagcaagtgctgcaaatcgccggcaccgagatgagc
agcctgcatcagcaactgtccggcgccggccatgcggtgctgctgactgacgcgcgcggt
gtgatcctcaattgcgtgaccgcgccggccgaacggaagattttcgagcgcgccggtctc
tggctcggcgctgactggagcgaagcctgcgaaggcaccaacggcatcggtacctgcctg
gtcgagcgtcaggcgctgaccattcaccaggacgagcattttcgcggccgccacaccggg
ctgacctgctcggcgagcccggtgttcgatccccatggtgaattgctggcggtacttgat
gtgtcctcggcccggccggacgtttcacgccaaagccagttccacaccatggcgctggtc
aatctgtcggcgaagatgatcgagagctgctatttcctgcgctgtttcgataatcaatgg
ttgctgcgttttcatctgcaggccgagtccgtcggcctgttcagcgaagggctgctggcg
tttgacggcgaagggcggatcagtgcggtcaaccagagtgcgctgaacctgctcgggcat
attcgcggtggtttgctcgggcaaccggtggaagcgtttttcgactgttcgctggatgac
ctgctcggtcgcgcgagtgccaacgccagcgccagttggccgctgcgcacccgtgatggc
cggcatctgtttgccgtgttgcgcggtgaatcgcgcaaacctactgccattgttccaacg
ccaatcactgctccagcgccccgcctgtccggcatttgcctcggcgacgaagcgttgcag
gcggagtttcgcaaagccctgcgcgtgttcgagcgcgacgtgccgctgttgatcaacggc
gaaaccggctcgggcaaggaggcgtttgccaaggcagtgcatcaggccagccagcgctgc
ggcaacgcttttgtcgcactcaattgcgcggccattccggaaagcctgatcgagagcgaa
ctgttcggctatcgcggcggcagcttcaccggcgcacgcaaggacggcatgcgcggcaag
ctgcaacaggccgatggcggcactttgttcctcgacgaaatcggcgacatgccactggcc
ttgcagacgcgtttgctgcgggtgctggaagatcggcaagtggtgccgattggcggtgaa
ccgcaagcggtggacgtgcgcatcatcagtgcgacgcaccgcaatttgctcgaacgagtc
gaggacggcagtttccgtgaagacctgtattaccgcttgaacgggctggaagtggcgttg
ccggcattgcgtgagcgcagtgataaatcgcagttgctggactttctcctggccgaggag
gcagggggtgaaacgatcctgatcgacgaagcggcgcggcaggcgttgctggcgttcgat
tggccgggcaatgtgcggcagttgcgcaatgtcctgcgtatgctggcggcgttgtgtgat
ggcgggcgggtcggcgttgaggatttgccggtgatgattcggcaggcgcgaccggcggct
gcgcctgcgcagattgccgcgcagccactggatgacgccgagcgtgtcgcattgctcaat
gcgcttgagcagacgcgctggcacatgacccatacagcgcagcaactgggcgtaagccgc
aacaccctttatagaaaactgcgtaaacacggaattgagcggcgtgtcagctga
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