Pseudomonas siliginis: NF676_24060 Help Entry NF676_24060       CDS       T08569                                  Name (GenBank) DEAD/DEAH box helicase   KO K03724   ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] Organism psii  Pseudomonas siliginis Brite KEGG Orthology (KO) [BR:psii00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:psii03400]     NF676_24060 Enzymes [BR:psii01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.4  DNA 3'-5' helicase      NF676_24060     5.6.2.6  RNA 3'-5' helicase      NF676_24060 DNA repair and recombination proteins [BR:psii03400]  Prokaryotic type   Other factors with a suspected DNA repair function    DNA helicases     NF676_24060 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DEAD_assoc WH_Lhr DEAD WH4_Lhr Helicase_C WH3_Lhr ResIII Cas3-like_C_2 DprA_WH AAA_22 MarR_2 HTH_IclR Fe_dep_repress PhoH Motif Other DBs NCBI-ProteinID:  UST79191 LinkDB All DBs Position 5235219..5239505 Genome browser AA seq 1428 aa AA seqDB search MNLPLPANSALAGFHPAVSAWFNKTFPAVTAAQARAWPLIRQRRSTLIAAPTGSGKTLTA FLAVLDELVHRGLEHPDGLPAETLVVYVSPLKALSNDIQINLQNPLAGITAQLREMGLPE LTITTAVRTGDTPQKDRAAMRKSAPHILVTTPESLYVLLGSESGRRMLGTTRTVIIDEIH AMAAGKRGSHLSLSLERLQALCAEPLTRIGLSATQKPVEAVARFLVGHNCPCEIVDIGHA RPRDLGIEVPPVPLSAVMANDVWELVYERLAELAREHRTTLIFVNTRRLAERLSRHLSER LGKQAVAAHHGSLAKEFRLDAEQRLKRGELQVLIATASLELGIDIGEVDLVCQISSPRSI AAFLQRVGRSGHQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDTLHIPEKPLDVLAQ QIIAEVSCQEWSEDALLAMFRRAWPYRDLDEKHYQALLSMLAEGYNGRQGIRSAYLHRDA VSRTLRGRRGAQLTAVTSGGTIPDNADYSVLLEPQGLNIGSVNEDFAVESIAGDVFQLGN TSYRILRVESGKVRVEDAQGMPPTIPFWLGEAPGRSDELSAAVARLQAQLDELLSASPGN LQPALDWLTATLGLNLASAEQLVEYLARARQTLGALPSQDTLLMERFFDESGGTQLIIHT PFGSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLHSNSAE HTLIQAVLDAPLFGVRWRWNAGVALALPRFTGGRKVAPQLQRMKSEDLIASVFPDQIACL ENLAGEREVPEHPLVEQTLDDCLHEAMDSEGWLTLLRRMERGEVRLIARDLPAPSPLAAE ILSARPYTFLDDAPLEERRTQAVINRRWSDPQSTDDLGALDADAITAVREEAWPSPNSMD EMHEALMSLACISDAEARANAGWPDWLQTLMASGRACRLQIDAEHQLWLARERLSCLQAL YPQATLASAAVVLPGFDEAWTFDEALVEVIRARLGAFGPTPLPAIAEPLALPAAQVSQAL ARLEREGYVLRGQFTPNSAIEEWCERHLLARIHRYTVKRLRREIEPVALQDFMRFLFDWQ HLTPATQGQGSAVLPAIVGQFEGYPAAASAWDSDILPARLKDYSPSWLDELCRNGKLVWT RISARQKVSGSALRSTPIVLLPRSQVGLWSALAEQTPVSELSPKTQKVFEALSQHGALFF DELIHEARLLRSELEIALQELVAAGLVNADSFAGLRALITPASKRQQRSSRRGRGAFIGG MDDAGRWALLRRGSSADAAETLEHVAMTLLRRYGVVFWRLLEREADWLPSWRELLRTFHR LEARGEIRGGRFVSGLAGEQFALPEAIPLLREVRRRPQDGSLVAVCGVDPLNLAGTLLPG AKVPALVSNRLVYRDGVSVAAVIAGKQQVWVELDPIAMGQLHAKLIRH NT seq 4287 nt NT seq  +upstreamnt  +downstreamnt atgaatctgcccctccccgccaacagcgcgctggccggttttcaccccgccgtcagcgcc tggttcaacaagacttttccggcggtcaccgccgctcaggcccgtgcgtggccgttgatc cgccagcgccgttcgacgctgatcgccgcgcccaccggctctgggaaaaccctgaccgcg ttcctcgccgtgctcgatgagctggtgcaccgaggtctggagcatcctgacggtctgccc gccgaaaccctggtggtctatgtctcgccgttgaaggcactgtccaacgacatccagatc aacctgcagaatccgctcgccggcattaccgcgcaattgcgcgaaatgggcctgccggag ctgaccatcactaccgccgtacgcactggcgacacgccgcaaaaagaccgcgccgcgatg cgcaagagcgcgccgcatattctggtgaccaccccggaatcgctgtacgtgctgctcggc tcggaatccgggcgcaggatgctcggcaccacgcgcacggtgatcattgacgaaatccac gccatggccgctggcaagcgcggcagtcatctgtccttgagccttgagcgtttgcaagca ctctgcgccgaaccgctgacccgcatcggcctgtccgccacgcagaaaccggtagaagcc gtggcgcggtttctggtcggtcacaattgcccctgcgaaatcgtcgacattggccacgcc cgcccacgagacctgggtatcgaagtgccgccggtgccgttgtcggcagtgatggccaac gatgtctgggaactggtgtacgagcgcctcgccgaactcgctcgcgagcaccgcaccacg ctgattttcgtcaacacccgacgccttgccgagcgcctcagccggcatctgagcgaacgc ctcggcaagcaggccgtggcggcgcaccacggcagcctggccaaagagtttcgtctcgat gcggaacaacggctcaagcgcggcgagctgcaagtgctgatcgccaccgcgtcgctggaa ctgggcatcgatatcggtgaggtcgacctggtctgccagatcagttcaccgcgttcgatt gctgcgtttctgcaacgagtcggtcgctccggacatcaggtcggcggcacgcccaagggt cgtttgttcgccaccacccgcgacgacctgatcgagtgcgccgccctgctcgactgcgtg cgccggggcgagctggatacgctgcacattccggaaaagccgctggacgtgctggcgcag cagatcatcgccgaggtcagttgccaggaatggtcggaggacgcgttgctggcgatgttc cgccgagcgtggccctatcgtgacctcgatgaaaaacactatcaggccctgctgagcatg ctcgccgaaggctacaacggtcgccagggcatccgcagcgcctacctgcaccgcgacgcc gtcagccgcacattacgtggccggcggggcgcgcaactgaccgccgtgaccagtggcggc accatcccggacaacgccgactacagcgtattgctagaaccccagggcttgaacatcggc agcgtcaacgaagacttcgccgtggaaagtatcgccggcgacgtgttccagctcggcaat acctcgtaccgcatcctgcgggtggaaagcggcaaagtgcgggtcgaggatgcgcagggc atgccgccgaccattccgttctggctcggcgaagcgccggggcgcagtgatgaactgtcg gcggccgtcgcgcgcctgcaagcgcagttggacgaattgctcagcgccagccccggcaat ctgcaaccggcgctcgactggctgaccgccacactcggcctcaacctcgccagcgccgag caactggtcgaatatctggcgcgcgcgcggcaaaccctcggcgccctgccctcgcaggac acgctgttgatggagcggtttttcgacgagtccggcggcacccaactgatcattcacacg ccgttcggcagccgcatcaaccgcgcctggggcctggccttgcgcaagcgtttctgccgc accttcaacttcgagttgcaggccgccgccagcgaagacgcgatcgtgctgtcgctgtcc accagtcacagcttcgagctcgacgaggtttggcgttacctgcacagcaacagcgccgaa cacacccttattcaagccgtgctcgatgcgcccttgtttggcgtgcgctggcgctggaat gccggggtggcgctggcgttgccgcgcttcaccggcgggcgcaaagtcgctccgcaactg caacggatgaaaagcgaagacctgatcgccagtgtgtttcccgaccagatcgcctgcctg gaaaacctcgccggcgagcgtgaagtccccgaacatccgctggtggaacagaccctcgac gattgcctgcacgaagcgatggacagcgaaggctggctgaccctgctgcggcgcatggag cgtggcgaggtgcgcctgatcgcccgggatttacctgcgccgtcgccgctggcggcagaa attctcagcgcccgaccctacacgtttctcgacgacgcgccgctggaggaacgccgcacg caagcggtgattaatcgacgctggagcgatccgcagtcgaccgatgatctcggcgcactc gatgccgatgcgatcaccgcagtgcgcgaagaagcctggccgtcgcccaattccatggat gaaatgcacgaagcgctgatgagcctcgcctgcatcagtgacgccgaagcgcgcgccaac gccggttggccggactggctgcaaacgctgatggccagcggccgcgcctgccggttgcag atcgacgccgagcatcagttgtggctggctcgcgaacgcctgagttgcctgcaggcactt tatccacaggccacgttggcgagcgcagcagtcgtgctgcccgggttcgacgaagcgtgg acattcgatgaggcgctggtcgaagtgatccgcgcccgcctcggcgcctttgggccgacc cctttgccagccattgccgagccgctcgccctgcccgccgcgcaagtgagtcaggccctc gcccgactggagcgtgaagggtacgtcttgcgcggccagttcacgccgaacagcgcgatt gaagaatggtgcgaacgccatctgctcgcgcgcatccatcgctacacggtcaagcgcctg cgccgggaaatcgaaccggtggcattgcaggacttcatgcgctttctgttcgactggcag catctgacgccggccacccaaggtcagggcagcgcggtgctgccggcgattgtcggccag ttcgaaggttatccggcggcagcctcggcatgggacagcgacatcctgccggcgcgcctc aaggactattcgccgagctggctggatgaactgtgccgcaacggcaaactggtgtggacg cgcatcagcgcgcggcagaaagtcagcggctcggcattgcgcagtacaccgattgtgctg ctgccgcgcagtcaggtgggtttgtggagtgcgttggctgaacagacgccggtgagtgag ttatcgccgaaaacacagaaagtctttgaggcgctgagtcagcatggcgcgctgtttttc gatgagttgattcatgaagcgcgcctgctgcgcagcgaactggaaattgctttgcaggaa ctggtcgccgcaggtttggtgaacgccgacagcttcgccggcctgcgcgcgctgatcacg ccggcaagcaagcgccagcagcgcagtagccgacgcgggcgcggcgcgtttatcggcggc atggacgatgccgggcgctgggcattgctgcgccggggttcgtcagccgatgccgccgag acactcgaacacgtcgccatgaccctgctgcgccgctacggcgtggtgttctggcgcttg ctcgaacgcgaagcggactggctgccgagctggcgggaattgctgcgcacctttcatcgt ctggaggcgcggggcgagattcgtggcgggcggtttgtcagtggtctggctggcgagcag tttgccttgcccgaagccattcccttgctgcgcgaagtacgccgccgcccgcaggacggc agcctggtggcggtgtgcggagttgatccattgaatctggccggaaccttgttgccgggg gcgaaggtgccggcgctggtgagcaatcggctggtttatcgcgatggagtgtccgtggcc gcggtgattgccggcaagcagcaggtttgggtagagctggatccgatagccatgggacaa ctgcatgccaagctgatccggcattga

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