Pseudomonas siliginis: NF676_24325
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Entry
NF676_24325 CDS
T08569
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psii
Pseudomonas siliginis
Pathway
psii03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NF676_24325 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psii03021
]
NF676_24325 (rpoC)
03400 DNA repair and recombination proteins [BR:
psii03400
]
NF676_24325 (rpoC)
Enzymes [BR:
psii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NF676_24325 (rpoC)
Transcription machinery [BR:
psii03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NF676_24325 (rpoC)
DNA repair and recombination proteins [BR:
psii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NF676_24325 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UST79244
LinkDB
All DBs
Position
complement(5280613..5284812)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGNSVSGTRIVDTTVGRALLFQVVPKGLSFDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGDEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKEIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTHVLVENERLSAEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcctcgccggagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggtgtgatctgcgaaaagtgcggcgttgaagtcgcactggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaaatcgctg
ccgtcgcgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgcgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccacccttgaaaaaggtcagctgctg
aacgacgaacagtacttcgaagcgcttgaagagttcggagacgatttcgacgcccgcatg
ggtgccgaagctgtccgtgaactgctgcacgctatcgacctggagcacgagattggccgt
ctgcgcgaagaaattccgcaaaccaactcggaaacgaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacctgccagagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtccactggtcccgctggatggcggtcgtttc
gcgacctccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtttgaag
cgcctgctggatctgtcggctccggacatcatcgtgcgcaacgaaaagcgcatgttgcag
gaagctgtcgatgcactgctcgacaacggtcgtcgtggccgcgctatcaccggttccaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggctctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaagctgccaagaaaatg
gtcgagcgcgaactgccagaggtttgggacgttctagctgaagtgattcgcgaacacccg
gttcttctcaaccgtgcaccaacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagctcgaagcg
cgtgcgctgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgcggatctgcaggaagtcgaccgtgtgttccgtgccggc
gaagctgcactgcacgccaaggtcaaggttcgtatcaacgaaaccgtcaacgaccgtgac
ggcaacagcgtgagcggtacccgtatcgtcgacaccactgtcggccgtgcgctgctgttc
caggttgtgccaaaaggtctgtcgttcgacgtcgtcaacctgccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggtttcgcgtactcgaccatctccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtgcagccaccgacgaa
gtgaaagagatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaagtgatcgacctctggtcgaaagcgaacgacgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgtcacggcgacgaagtcgaccaagagtctttcaac
tcgatgtacatgatggccgactcgggtgcgcggggttccgcagcacagattcgtcagctg
gccggtatgcgtggtctgatggccaagccggacggttccatcattgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaactgcgaactccggttacctgactcgtcgtctg
gtagacgtggcgcaggatctggttgtaaccgagatcgattgcggcaccgaacacggtctg
ctgatgactccgcacattgaaggcggtgacgttgtagagccgttgggtgagcgcgtattg
ggtcgtgtcattgcccgtgacgtattcaagccaggcaccgaggacgtcatcgttcctgcc
ggtactctggtagacgagaagtgggtcgaattcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcagctgcgaaacccgctatggcatttgcgccaagtgctacggc
cgtgatctggctcgtggtcaccaggtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgcg
gcaagccgtacttccgcagccgacagcgttcaggtgaagaatggcggtaccgtccgtctg
cacaacctgaagcacgttgagcgagtggatggtcacctggttgctgtgtcccgttccggt
gagctggcaatcgctgacgatttcggtcgtgagcgcgagcgttacaagctgccgtacggt
gctgtgatttcggttaaagaaggtgacaaggtcgacgctggcgcaatcgtggccaagtgg
gatccgcacactcacccgatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagagggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgcgaaagatcgtccagctgccggcaaggaaatccgtccagcagtgaagatg
gtcgacgacaacggcaaggatctgttgctgccaggcactgacgttatcgctcagtacttc
ctgccagccaacgccctggtcggtgtggctgacggtgcgaagattgcgatcggtgatgtt
atcgctcgtatcccgcaggaaacttcgaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacctgttcgaagcgcgtcgtccgaaagaagcgtcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgccgtctggtcattaccccgaac
gacggtagcgatccgtatgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggtccaagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggccaagtacatcgtcaacgagatccaggacgtt
tatcgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgagatctccgagtccggcgattccagcttcatcaagggcgaccagatg
gaactgactcacgttctggtcgagaacgagcgtctgagcgcggaagacaagtttgtctcc
aagttcactcgcgttctgctgggtatcaccaaggcgtcgttgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccactcgcgtactgaccgaagcggcagtcaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtagtcgtgggtcgtctgatcccggccggt
accggtcttgcctatcacagcgagcgcaagcgtcgccgtgatgccgacaagccgttgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaactcgagcggtaactga
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