Pseudomonas siliginis: NF676_25305
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Entry
NF676_25305 CDS
T08569
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psii
Pseudomonas siliginis
Pathway
psii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NF676_25305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psii03019
]
NF676_25305
Enzymes [BR:
psii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NF676_25305
Messenger RNA biogenesis [BR:
psii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NF676_25305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UST79422
LinkDB
All DBs
Position
5504106..5505974
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AA seq
622 aa
AA seq
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MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKIYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDSSTIEAEKPEARERPDIRNPRNSRGPRGDGPNGGGGGGG
RKDKGKDKGKEKPAGERGERPARQQKPREGTPSRDQRPSQPPRAAADRAPDEFLDDDIDN
FGNRVDYVPKAAPAGGRGRRPGAPAQGAGAPAPRGGQPQGRQNGPRNSNGSSTGTPPAKR
SGPRNGAPRDGQGRRDESAPRNRRPARDDQPRSEPAVQNPRSNGPKIMHKESKADRFPTP
EQLDQLPSRPRGEKPALLTRNR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgtgccatcgaagatgcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtggcggctcagacaggtaccggtaaaaccggcggcttcgccctcccgattctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtgctggtcctgaccccgacccgcgaactcgcggcccaggtgcacgagagcttcaag
atctacgcccgtgacctgaaattcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggtccaggccatgtcccgtggcgtcgacgttctcgtcgcctgcccgggtcgcttg
ctcgacctcgccggccagggcagcgtcgatctgtcccacgtggaaattctcgttctcgac
gaagccgaccgcatgctcgacatgggttttgtccacgacgtgaagaaagtcctcgcgcgt
ctgccggccaagcgccagaacctgttgttctcggcgaccttctccaaagacatcaccgac
ctcgccggcaagctgctgcacaacccggaacgcatcgaagtcacgccgccaaacaccacg
gtcgagcgcatcgaacaacgcgttttccgcctgccggccagccacaagcgtgcgctgctg
gcgcacctgatcaccgccggcgcgtgggaacaggtgctggtttttacccgcaccaagcac
ggcgccaaccgtctcgctgaatacctggacaaacacggcctgccggctgtggcaatccac
ggtaacaagagccagaacgcgcgcaccaaagccctggccgacttcaaggccggcgaagta
cgcattctggttgccaccgacatcgctgcccgtggcctggacatcgatcagttgccgcat
gtggtcaacttcgagctgccgaacgtcgatgaagactatgtgcaccgtatcggccgtacc
ggccgcgccggtcgttcgggcgaggcgatctcgctggtcgcgccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgaccaagcagaagattgccgacggcgatctgatgggcttc
gactccagcaccatcgaagccgagaagccggaagcccgcgagcgtccggacatccgcaac
ccgcgcaattcccgtggcccgcgtggcgacggtccgaatggcggcggcggtggtggtggt
cgcaaggacaaaggcaaagacaagggcaaggaaaaaccggccggtgaacgtggcgagcgc
cctgcccgtcagcagaaaccgcgcgaaggcaccccgagccgcgaccagcgcccgagccag
ccaccgcgtgcagcggctgaccgtgccccggacgaattcctcgacgacgatatcgataac
ttcggtaaccgcgtcgactacgtgccgaaagccgcccctgccggcggccgtggccgtcgt
ccgggcgcaccggcgcaaggcgctggcgcacccgcaccacgcggtggccagcctcagggt
cgccagaacggtccgcgcaacagcaacggctcgagcaccggcacgccaccagccaaacgc
agcggcccgcgcaatggcgcaccgcgtgacggtcagggtcgtcgcgacgaatccgcgccg
cgcaatcgccgcccggcccgtgacgatcagcctcgcagcgaaccggccgtgcagaacccg
cgcagcaacgggccgaagatcatgcacaaggaatcgaaagccgaccgcttcccgacgcct
gagcaactcgatcaactgccaagccgcccgcgtggcgagaaaccagcactgctgacccgc
aatcgctga
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