Pseudomonas siliginis: NF676_26880
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Entry
NF676_26880 CDS
T08569
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
psii
Pseudomonas siliginis
Pathway
psii02025
Biofilm formation - Pseudomonas aeruginosa
psii03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
NF676_26880 (tssM)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
NF676_26880 (tssM)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
psii02044
]
NF676_26880 (tssM)
Secretion system [BR:
psii02044
]
Type VI secretion system
Imp/Vas secretion system core components
NF676_26880 (tssM)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
IcmF-related
IcmF-related_N
IcmF_C
IcmF_helical
Motif
Other DBs
NCBI-ProteinID:
UST79717
LinkDB
All DBs
Position
complement(5834685..5838224)
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AA seq
1179 aa
AA seq
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MKKFFKKVGAFLRQTWVWTLLLVLFVALLVWFVGPLLAVDDYKFWESATSRLLTISVLFL
IWGLTMVFVSWRAGIRKKAEEESEDGQDRIRREELIDEEQKELKARFKDALKTLKTSSLY
RGRSERWRSDLPWYLLIGPQASGKTSLLDFSGLEFPINKIDRKLTRDTLGTRHCDWYFAD
HGVLIDTAGRYTTQPDAEVDGNAWTTLLELLRKRRRGRPLNGVLVTIPVETLTGGSEQDI
ETLARQVRSRLQDVHQKLHVDVPVYLVLSKADKLLGFDEFFDQLTREESDQVLGTSFRKD
QVGTDVTVLRNEFEELLRRLNSQVIMRMHSERDTQRRGRILDFPHQLGQIGERLCLFVDM
AFTGNRYQRATQLRGFYLTSAPHLTQEMDSTTAGIGASLGMNAGVLPTLRSGRSRFIHHL
LSQVIFPEADLAGLDKRERSRIHWGQRALYVGALAALALFGMLWAGGFSANYERLENLRT
LAQNWTQQRSAVTPRDDAMGVLKVLDTSYAATQVFPNKSDVSYHERGGLYQGEEINPVVK
TAYERELEAQLLPRVATMLEGQIRANMKDRDRLLNSLRAYLMLNMKDRRDAAWLKDWVAT
DWSQRYTGNTAVQNGLNTHLERLLKQPFIYPLNDQLVTQARQVLRSESLANVVYRMLREQ
ARNLPDYRFSQHLGPQGSLFIGTEYVIPGFYTQQGYQQYFSVQGAALVTDILRDNWVLGE
GAGISDMDLRRLMVELEQLYFRDYANYWSEAVGQVALPPISDAGEGAEQLAGLTSANSPV
LALLTEVRENTRFEAAADPVDEAGEAADALAGQKGKLGKVGKLAAAAADKASALNVAKNL
PDTAKKSLQRRFEPLHRLLDDNNGPGADLTPAFSALNDLQLQLAGLARSSTPEQAAFEMA
KTRMSGQRDALTNLRNASGRLPRPLSVWFNVLAEDSWRLVLNDAYQYLNGRYQNELYSVY
GKTISKRYPFSASSTSDVAISDFREFFRAQGTVDRFFDSYMRPFVSGDPGNYRMRSVDGH
SLPVSKVYLDQMAAAQTIRQSFFSINPAEPTVQFKLEPYTLDPAVSRSEFKFGDKTMEYR
HGPILPMTFKWPTDAEDGRTSLVMDKMAGRPIGIEKNSGPWSLFRLFDLMQTEYLNGRDV
LVLKADVGGLRANYLLTSQRTPNPFDMGVLRTFRMPVQL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagtttttcaagaaagtcggcgccttcctgcgccagacctgggtctggactctg
ctgctggtgctgttcgtggcgctgctggtgtggttcgtcggcccgttgttggcggtcgat
gattacaagttctgggaaagtgcgacctcgcgcctgctgaccatcagcgtgctgttcctg
atctggggcctgaccatggtcttcgtcagctggcgcgccggtatccgcaagaaagccgag
gaagaaagcgaggacggtcaggaccgcattcgccgcgaagagctgatcgacgaagaacag
aaagagttgaaggcgcgtttcaaggacgcgctgaaaaccctgaagacgtcgagcctgtat
cgcggtcgcagcgagcgctggcgcagtgacttgccgtggtacctgctgatcggtccgcag
gcctcgggcaaaaccagcctgctggacttctccggtctggaattcccgatcaacaagatc
gaccgcaagctgacccgcgacaccctcggcacccgtcattgcgactggtatttcgccgat
cacggtgtactgatcgacaccgccgggcgttacaccactcaaccggacgccgaagtcgac
ggcaacgcctggacaaccctgctggagctgctgcgcaagcgtcgtcgcggtcgtccgttg
aacggcgtgctggtgaccattccggtggaaaccctgaccggcggcagcgagcaggacatc
gaaaccctcgcacgccaggtgcgcagccgtctgcaggatgtgcatcagaaactgcacgtc
gacgtgccggtgtatttggtcctgagcaaggctgacaagctgctcggcttcgacgagttc
ttcgatcaactgacccgcgaagaaagcgatcaggtgctcggcaccagtttccgcaaggat
caggtcggcaccgacgtcacggtcctgcgcaacgagttcgaagagctgctgcgccgcctg
aacagccaagtgatcatgcgcatgcactccgagcgcgacactcagcgccgtggccgcatc
ctcgacttcccgcatcagctcgggcagatcggcgagcgcctgtgcctgttcgtcgacatg
gcgttcaccggcaaccgctatcagcgcgccacgcaactgcgcggcttctacctgaccagc
gcgccgcacctgacccaggaaatggattcgaccaccgccggcatcggcgccagcctgggc
atgaacgccggtgtgctgccgactctgcgcagcggtcgttcgcgattcatccaccacttg
ctcagccaggtgattttccccgaggccgatctggccggtctggacaagcgcgagcgcagc
cgcattcattggggccagcgtgcgctgtacgtcggcgctctggcggcactggcactgttc
ggcatgctctgggccggtggtttctcggccaactacgagcgtctggaaaacctgcgcacg
ctggcgcagaactggacccagcaacgctcggccgtgacgccgcgcgatgacgccatgggc
gtgctgaaagtcctcgacaccagctacgccgcgacccaggtgttcccgaacaagagcgac
gtgtcgtaccacgagcgtggcggcctgtatcagggcgaagagatcaacccggtggtgaaa
accgcctacgagcgtgagctggaagcgcagttgctgccacgggtggcgaccatgctcgag
gggcagatccgcgccaacatgaaggaccgcgatcgcctgctcaacagcctgcgcgcgtac
ctgatgctgaacatgaaggatcgtcgcgacgcggcgtggctcaaggactgggtcgccact
gactggtcgcagcgctacaccggcaacaccgctgtgcagaatggactgaacacgcacctc
gagcgtttgctcaagcagccgttcatctacccgctgaacgatcaactggtcacgcaggcg
cgtcaggtcctgcgcagcgagtcgttggccaacgtggtttaccgcatgctccgcgagcag
gcgcgcaacctgccggactaccgcttcagccagcacctcggcccgcaaggttcgttgttc
atcggcactgaatacgtgatcccgggtttctacacccagcagggttatcagcagtatttc
tcggtgcagggcgcggcgctggtcaccgacatcctgcgcgacaactgggtgctgggcgaa
ggcgcgggcatcagcgacatggatttgcgtcgcctgatggtcgagcttgagcagctgtac
ttccgcgactacgccaactactggagcgaagccgttggccaggtcgcactgccaccgatc
agcgacgctggcgaaggcgccgagcaactggcgggcctgacttcggccaactcgccggtc
ctcgcgctgctcaccgaagtgcgtgaaaacacccgcttcgaagccgcggctgatccggtc
gatgaagccggcgaagccgccgatgcgctggccgggcagaaaggcaaactgggcaaggtc
ggcaaactcgccgccgctgccgccgacaaggcttcggcgctgaacgtggcgaagaacctg
ccggacaccgcgaagaaatccctgcaacgccgcttcgaaccgctgcatcgtctgctcgac
gacaacaacggcccgggcgccgacctgacgccagcgttcagcgcactcaacgacctgcaa
ctgcaactggccggtctggcccgttccagcacgccggagcaagccgcgttcgagatggcc
aagacgcgcatgagcggccagcgtgatgcgctgaccaacctgcgcaatgcctccggtcgt
ctgccgcgtccgctgagcgtgtggttcaacgtgctggccgaggactcgtggcgtctggtg
ctcaacgatgcctatcaatacctgaacggccgttatcagaacgagctgtacagcgtgtat
ggcaaaaccatcagcaagcgttatccgttcagcgccagcagcaccagcgacgtggcgatc
agcgacttccgtgagttcttccgtgctcaaggtaccgtcgaccgtttcttcgacagctac
atgcgtccattcgtcagcggcgatccgggcaactaccgcatgcgcagcgtcgacggtcac
agcctgccggtatcgaaggtctacctcgatcagatggcggcggcgcagaccattcgccag
agcttcttctcgatcaacccggccgagccgacggtgcagttcaagcttgagccctacacc
ctcgatccggcggtcagccgctccgaattcaagttcggcgacaagaccatggaataccgt
cacggcccgatcctgccgatgaccttcaagtggccgaccgatgctgaagacggtcgcacc
agtctggtcatggacaagatggccgggcgtccgatcgggatcgagaaaaactccggccca
tggtcgctgttccgtctgttcgacctgatgcagaccgagtacctgaacggtcgtgacgtg
ctggtactgaaagccgacgtgggcggcctgcgcgccaactacctgctgaccagccagcgc
acgccgaatccgttcgacatgggcgtgctgcgcaccttccgtatgccggtgcagctctga
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