KEGG   Pseudomonas siliginis: NF676_26910
Entry
NF676_26910       CDS       T08569                                 
Name
(GenBank) sigma 54-interacting transcriptional regulator
  KO
K11914  sigma-54 dependent transcriptional regulator
Organism
psii  Pseudomonas siliginis
Brite
KEGG Orthology (KO) [BR:psii00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:psii03000]
    NF676_26910
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:psii02044]
    NF676_26910
Transcription factors [BR:psii03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    NF676_26910
Secretion system [BR:psii02044]
 Type VI secretion system
  Imp/Vas secretion system related proteins
   NF676_26910
SSDB
Motif
Pfam: Sigma54_activat Sigma54_activ_2 HTH_8 AAA_5 GAF_2 HTH_30 GAF HTH_50 AAA_16 AAA_2 AAA_7
Other DBs
NCBI-ProteinID: UST79723
LinkDB
Position
complement(5842613..5844133)
AA seq 506 aa
MFTQVPQPLVYAEALLAQFASLSRAADSAALLGEFVRGLAELSGCELTQLYLLDATHTCL
GMNAECLDGALQPRQAASLPADYNGEQLLQFALCQNRVVCLDDLTGSLHETSFLPAASTP
WQSLLCVPLVNQHKSVEGLLLCASRRRTDLQGFADSLGQLGSFVLGQLHLLQRLRQPAAE
SATATRSVPSISGYGLIGKSAAMRQTYSLISKILHSPYTVLLRGETGTGKEVVARAIHDC
GPRRSQAFIVQNCAAFPENLLESELFGYRKGAFTGADRDRAGLFDAANGGTLLLDEIGDM
PLSLQAKILRVLQEGEIRPLGSNDTHKIDVRIIAATHRDLAALVSEGKFREDLYYRLAQF
PIELPALRQREGDILDLARHFAEKTCTFLQRDPVRWSDSALEHLCGYTFPGNVRELKALV
ERAVLLCEGGELLAEHFSLRLEPMPEDNSGLNLRERLEQVERTLLLDCLRKNDGNQTLAA
RELGLPRRTLLYRLGRLNINLGDFDG
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgttcactcaggtgccgcagccgctggtctatgccgaagcgttgctggcgcagttcgcc
agtctgtcgcgggcggcggacagtgctgcgctgctgggtgaattcgtccgtggcctggcc
gagctgagtggctgcgaactcactcagctgtatctgctcgacgccacccacacttgcctg
gggatgaacgccgagtgcctcgacggtgcgttgcaaccgcgtcaggcggcgagcctgcca
gcggattacaacggcgagcaactgctgcaattcgccctgtgccagaaccgcgtggtgtgc
ctcgacgacctgaccggcagcctgcacgaaaccagttttctaccggcggcgagcacgccg
tggcagtcgctgttgtgcgtgccgctggtcaatcagcacaagtcggtcgagggcttgttg
ctgtgtgccagccgtcggcgtactgacttgcagggttttgccgattccctcggccagctc
ggctcgttcgtgctcggccaactgcatctgctgcaacgcctgcgtcagccagccgccgaa
tcggccaccgccacacgcagcgtgccgagcatcagcggctacggcctgatcggcaaaagc
gcggcgatgcgccagacctattcgctgatcagcaagatccttcacagcccgtacaccgtg
ctgttgcgtggcgagaccggcaccggcaaggaggtggtggcgcgggcgatccacgattgc
ggcccgcgtcgctcccaggcgttcatcgtgcagaactgcgcggcgtttccggaaaacctg
ctggaaagcgaactgttcggctaccgcaaaggcgccttcaccggcgccgatcgagatcgc
gcagggctgttcgacgcggccaatggcggcacgttgctgctcgatgaaatcggcgacatg
ccgttgtcgctgcaagcgaagattctgcgcgtgttgcaggaaggcgagatccgtccgctg
ggttctaacgacacgcacaagatcgacgtgcgcatcatcgccgcaacgcaccgtgatctg
gcggcactggtcagcgaaggcaagttccgcgaggacttgtactaccgcctcgcacaattc
ccgatcgagctgccggccctgcgtcagcgcgaaggcgacatcctcgatctagcccggcat
ttcgccgagaagacctgcacctttctgcagcgtgatccggtgcgctggtcggattcggcg
ctggagcatctgtgcggttacaccttccccggcaacgttcgcgaactcaaggcactggtc
gagcgcgcggtgttgctctgcgagggtggcgagttgctcgccgagcatttttccctgcgt
ctggaaccgatgcccgaagacaacagcggcctgaatctgcgcgaacggctggagcaagtc
gagcgcacattgctgctcgattgcctgcgcaagaacgacggcaaccagaccctcgcggcc
cgcgaactgggcctgccgcggcgcacgttgctgtaccgcctcgggcgcctgaatatcaat
ttgggtgactttgatggttga

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