KEGG   Pseudomonas silesiensis: PMA3_00005
Entry
PMA3_00005        CDS       T05412                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
psil  Pseudomonas silesiensis
Pathway
psil03030  DNA replication
psil03410  Base excision repair
psil03420  Nucleotide excision repair
psil03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:psil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PMA3_00005
   03410 Base excision repair
    PMA3_00005
   03420 Nucleotide excision repair
    PMA3_00005
   03440 Homologous recombination
    PMA3_00005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psil03032]
    PMA3_00005
   03400 DNA repair and recombination proteins [BR:psil03400]
    PMA3_00005
Enzymes [BR:psil01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PMA3_00005
DNA replication proteins [BR:psil03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     PMA3_00005
DNA repair and recombination proteins [BR:psil03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     PMA3_00005
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PMA3_00005
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 DNA_polI_exo1 Obc1_cap
Other DBs
NCBI-ProteinID: ANJ53612
UniProt: A0A191YL59
LinkDB
Position
complement(98..2866)
AA seq 922 aa
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGGTFRDEMFAEYKANRPSMPDDMRVQIEPLHASVKALGFPLLCVDNVEADDVIGTLAR
SSAAANRPVVISTGDKDMAQLVDGHITLVNTMTGSALDVEGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLPIRGAKTLPAKLEEHKEM
AFLSYRLATIKIDVPLDVGLDDLKMGKPDHDKLAELYTLLEFKSWFDENQRDAKRSGQDI
VEVVDEQPGTVEAKYETILDQKRFEAWLDKLAKAPLIAFVTETNGSDAQHSQLVGLSFSV
AANEAAYIPLTHSYMGVPEQLDRDTVLLALKPLLENPNQLKVGQHAKFETNILANCAIGG
DQSNGIIVQGIAYDTMLESYVLDSTATRHDMDSLALKYLGQSKTDIHEIAGKGVKQLTFD
QISLELAGPYAAEDADVTFRLHLALQEKLAATPSLGKVLNEIEMPLMPVLARIERQGALV
DANLLGIQSVELGEKLVALEREAFAIAGEEFNLGSPKQLGVILYEKLGLPILSKTAKGQA
STAEAVLAELAEQDYPLPKVLMQYRSLSKLKSTYTDRLPEQINARTGRIHTSYQQAVAAT
GRLSSIDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLYA
FRNDLDVHKATAAEVFGVELEAVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQA
YIDRYFTRYPGVLEYMERTRAQAAEQGFVETIFGRRLYLPEINAKNPALRKGAERTAINA
PMQGTAADIIKKAMVAVDNWLTSSGLDAKVILQVHDELVLEVREDLVDQVREEIRVHMSG
AAQLDVPLLVEVGVGNNWDEAH
NT seq 2769 nt   +upstreamnt  +downstreamnt
atgagccaagcccccctcgtcctggtggacggttcttcttacctgtaccgcgcgtttcac
gccctgccaccgctcaccacgtccaaaggcctgccgaccggtgcggtcaaaggcgtgttg
aacatgctcaagagcctgcgcaagcagtacccggacagtccgtttgccgtggtgttcgac
gccaagggcgggacatttcgcgacgaaatgttcgccgaatacaaggccaaccgtccgagc
atgcccgatgacatgcgtgtccagatcgagccattgcacgccagcgtcaaggccctgggc
ttcccgttgctgtgcgtggacaacgtcgaagcggacgacgtgatcggcaccctggcccgc
agcagtgccgccgccaaccgcccggtggtgatctccaccggtgacaaggacatggcgcaa
ctggtcgacgggcacattaccttggtcaataccatgaccggtagcgcgctggacgtggag
ggcgtgaaggagaaattcggcgtcgctcccgagcagatcatcgattacctggcgctgatg
ggcgattcgtccgacaacattccgggcgttccgggcatcggccctaaaaccgcatccggc
ctgctggtcggcgtgaacggcggcctgaccgagctctacgcgcagctcgatatcgtgccg
accctgccgattcgcggggccaagaccctgccggccaagctcgaagagcacaaggagatg
gcatttctctcctaccggttggcgacgatcaagatcgatgtgccactggatgtcggcctg
gacgacttgaaaatgggcaagccggaccacgacaaactggccgaactctacaccctgctg
gaattcaagagctggttcgatgagaaccagcgcgacgccaagcgctcgggccaggacatt
gtcgaggtcgtcgacgagcagccgggcaccgtcgaagcgaagtacgaaaccatccttgat
caaaagcgcttcgaggcctggctggacaagctcgccaaggcaccgctgatcgctttcgtc
accgagaccaatggcagcgacgcccaacattcgcaactggtgggcctgtcgttttccgtc
gcggccaacgaagcggcctacattccgctgacccattcctacatgggcgtgccggaacaa
ctggatcgcgacacggtgctgctggcgctgaagccgctgctggagaacccgaaccagctg
aaagtcggtcagcacgccaagttcgaaaccaacatcctggccaattgcgccatcggtggc
gaccagagcaacgggattattgttcagggtattgcctacgacaccatgctcgaatcttac
gtactcgactcgacggccacccgtcacgacatggacagcctggcgctcaagtatctgggc
caaagcaagaccgacattcacgagattgcgggcaaaggcgtcaaacagctgaccttcgac
cagatctccctcgagctggcgggcccctatgccgccgaagacgccgatgtcaccttccgc
ctgcacctggccttgcaggaaaaactcgccgccacgccaagcctgggcaaagtgctgaac
gaaatagagatgccactgatgccggtactggcccgtatcgaacgccagggtgcgctcgtg
gacgccaacctgctgggcatccagagcgtcgagctgggcgagaaactggttgccctggag
cgggaagcctttgccatcgccggtgaagaattcaacctcggctcgccaaaacaactgggc
gtgatcctttacgaaaagctcggtttgcctattctcagcaaaaccgccaagggccaggcc
tcgacggccgaagcggtgttggccgagttggccgaacaggactacccgctgcccaaggtg
ctgatgcaataccgctcgctgagcaaactcaaaagcacctacaccgaccgtttgccagag
cagatcaacgctcgcaccgggcgcatccatacgtcttatcagcaagccgttgccgccacc
ggacgcttgtcgtcgatcgatccgaacctgcagaacattccgatccgtaccgccgaaggc
cggcggattcgtcaggcgttcgtcgcgccaaaaggctacaaactgttggccgcggactat
tcgcagatcgaactgcggatcatggctcacctggccaaggatgaaggcttgctgtatgcc
ttccgcaatgacctggacgtgcacaaggccacggcagcggaagtcttcggggtcgaactg
gaggcggtcaccaccgaccagcggcgtagcgccaaggcgatcaacttcggtttgatctac
ggcatgagcgcctttggcctggccaagcagatcggcgtcgatcgcaagcagtcccaggct
tatatcgaccggtacttcacccgttatcccggcgtgctggagtacatggagcgcacccgc
gcccaggccgccgagcaaggcttcgtcgaaaccatcttcggtcgtcgcctgtacctgccg
gaaatcaacgcgaaaaacccggccctgcgcaaaggtgccgaacgcacggcgatcaacgcc
ccgatgcaaggcactgcggcggacatcatcaagaaagccatggtcgccgtggataactgg
ctgacctcctcaggcctcgacgccaaagtcatcctgcaggtgcacgatgaattggtgctt
gaagtgcgcgaagacctggtcgaccaggtgcgtgaggaaattcgcgtgcacatgagcggg
gccgcgcaactggatgtgccgctgctggtcgaggtgggggtaggcaataactgggatgag
gcgcactag

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