Pseudomonas silesiensis: PMA3_02115
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Entry
PMA3_02115 CDS
T05412
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psil
Pseudomonas silesiensis
Pathway
psil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMA3_02115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psil03019
]
PMA3_02115
03016 Transfer RNA biogenesis [BR:
psil03016
]
PMA3_02115
Enzymes [BR:
psil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PMA3_02115
Messenger RNA biogenesis [BR:
psil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PMA3_02115
Transfer RNA biogenesis [BR:
psil03016
]
Prokaryotic type
tRNA degradation factors
PMA3_02115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
TRAM_2
TRAM
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
ANJ54007
UniProt:
A0A191YMA1
LinkDB
All DBs
Position
480632..483277
Genome browser
AA seq
881 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILQHLADRGSPANREQLVEEFGLTTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGMIVEVVSRAHETIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANAKIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDNESQVRGNSVYFPERVIPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKSGEMTDYCFYEAVIHSHARLTYNKVSAMLETPKLTEARQLRGEYNDVLP
HLKQLYSLYKVLLAARHVRGAIDFETLETRIIFGTERKIAEIRPTVRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLA
GIKDRPDFHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKMNTPHVRRAGAMTIPKARIYPYDEAILEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTISAPIGRKKRGTEKTEPAAKTAAKTAAEP
ASAKTAGRRPAKEKAVEAYRPSDAAAKNAELRKSRELKQALLSEAKSGGKAASGGKTGRS
APDKAPGGKPAKPSKHRKGPPKAGSAPAAKSGGVRKPKAKS
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcctagccgcgaactgatccttcagcaccttgctgatcggggttcgcctgctaac
cgcgagcagctggtcgaagagtttggtctgaccacagaagaccagatcgaagccctgcgc
cgccgcctgcgcgccatggagcgcgacgctcaactcatctatacccgtcgcggcacctat
gcgccggtggacaagctcgacctgatcctgggccgcatcagcggccaccgtgacggcttc
ggcttcctggtcccggacgacggcagtgacgacctgttcatgagcccggcgcaaatgcgc
ctggtgttcgatggcgaccgtgccctggcccgtgtttccggcctggatcgtcgcggtcgc
cgcgaaggcatgatcgtcgaagtggtctcccgtgctcacgaaaccatcgttggtcgctac
ttcgaagagggcggtatcggtttcgtggtggcggacaatccgaagatccagcaggaagtg
ctggtgacaccgggccgcaatgccaacgccaagatcggtcagttcgtcgaagtgaagatc
actcactggccgacaccgcgcttccagccgcagggcgacgtggttgaggtcgtggggaac
tacatggcgcctggcatggagatcgatgttgccctgcgcacttacgatattcctcacgtc
tggcctgaagcggtgctcaaagaagccgccaagctcaagccggaagtcgaagagaaggac
aaagagaagcgcatcgacctgcgtcatctgccgttcgtcaccattgacggcgaagatgcg
cgcgacttcgacgacgcggtctactgcgaagccaagccgggcaagctgcgcctgttctcc
ggtggctggaagttgtacgtggcgattgccgacgtttccagctacgtgaaaatcggttcg
gccctggataacgaatcccaggttcgcggcaactcggtgtacttccccgagcgcgtgatt
ccgatgctgccggagcagctgtccaacggcctgtgctcgctgaacccgcacgtcgatcgc
ctggccatggtttgcgagatgaccatctccaaatccggcgagatgaccgactattgcttc
tacgaagcggtgatccactctcacgcgcgcctgacctacaacaaggtcagcgccatgctg
gaaacgccgaaactcaccgaggcgcgtcagcttcgtggcgagtacaacgacgttctgccg
cacctcaagcagctttactcgctgtacaaagtgctgctcgccgctcgtcacgtgcgtggc
gcgatcgatttcgaaaccctggaaacccggatcatcttcggcaccgagcgcaagatcgcc
gagatccgcccgaccgttcgcaacgacgcccacaagctgatcgaggaatgcatgctggcg
gccaacgtggccaccgccgaattcctgaaaaagcacgaaattcctgcgctgtatcgcgtt
cacgatggcccgccaccggagcgtctggaaaaactgcgtgcgttcctcggcgagctcggc
ctgtccctgcacaaaggcaaggacggcccgtcgccgaaggattaccaggcattgctggcc
ggcatcaaagaccgtcccgatttccacctgatccagaccgtgatgctgcgctcgttgagc
caggcggtgtacagcgccgataaccagggccacttcggcctgaattacgaagcctatacg
cacttcacctcgccgatccgtcgctacccggacttgctcacgcaccgggcgatccgcagc
gtcatccattcgaaaatgaacaccccgcacgttcgccgtgccggcgcgatgaccattccg
aaggcgcgcatctatccgtacgacgaagcgatcctggagcagctcggcgagcagtgctcg
atgagcgagcgccgcgccgacgaagccacccgtgacgtggtgaactggctcaagtgcgag
ttcatgaaggaccgcgtaggcgagtcgttcccgggtgtgatcaccgccgtgaccggtttc
ggcctgttcgtcgagctgaccgatatctacgtcgaaggcctggtgcacgtcaccgcgctg
ccgggcgattactaccatttcgatcctgtgcatcaccgcctggccggtgagcgtaccggc
cgcagcttccgcttgggcgacaccgttgaagtccgggtcatgcgcgtcgacctcgacgag
cgcaagatcgacttcgagatggctgaaaaaaccatcagcgcgccgatcggtcgcaagaag
cgcggaacggaaaaaaccgagccagccgccaagactgctgcaaaaacagcggcagagccg
gcatcggcgaaaaccgctggtcgtcgtcctgccaaggaaaaggctgtcgaggcctatcgc
ccgagcgatgccgcggcgaaaaacgccgagttgcgcaagagtcgtgaactgaagcaggcg
ttgctgtctgaagcaaaaagcggcggtaaagcggcgtctgggggaaagaccggacggtcg
gcgcctgacaaggcccccggcggcaagccagcaaaaccgagcaagcaccgtaaaggcccg
cccaaggcgggttccgctccagctgccaaaagcggcggggtacgtaaacctaaggccaag
tcatga
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