Pseudomonas silesiensis: PMA3_07725
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Entry
PMA3_07725 CDS
T05412
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psil
Pseudomonas silesiensis
Pathway
psil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMA3_07725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psil03019
]
PMA3_07725
03009 Ribosome biogenesis [BR:
psil03009
]
PMA3_07725
Enzymes [BR:
psil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PMA3_07725
Messenger RNA biogenesis [BR:
psil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PMA3_07725
Ribosome biogenesis [BR:
psil03009
]
Prokaryotic type
rRNA helicases
PMA3_07725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
ANJ55053
UniProt:
A0A191YQJ9
LinkDB
All DBs
Position
1691766..1693439
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AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNAQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaatccgaatatccttgcagcc
gtcatcgcgactggctacgaagagccttcggctattcagcagcaatcgatcccgatcatc
atggccggccaagacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttc
gccctgcctatcctgcactgcatcgatcctgccaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccgggcgttaccgttgtggccgtttacggcggcgcccctatgggtccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccacgccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtattgtcgaccgtgaaccacctggttctcgacgaagctgacgaa
atgctcaagctgggcttcatggacgacctggaagtcatcttcaaggccttgccagcaacc
cgtcagaccgtattgttctcggccaccctgccgcagtcgatccgtgccattgccgaacgc
catctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtggaagatttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgcgtgatcgaatccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgccgctcgtggcctggacgttccgcgcatcactcacgtgttcaacgtt
gacatgccgtacgatccagagtcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgacgccacgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaggttgccgaagttcgcctgccggacgcccaggccgttctc
gatgcccgcatcaagaaactgaccaacagcctgtcgccgctggtggccgatgccgaatcg
acccacggtgatctgctggatcgcctgactgccgacatcggttgcaccccgcgtgcactg
gccgctgctctgttgcgcaaggcaaccaatgctcaagcgttgaccctggccgcaatcgag
aaagaacgtccactggtgccgaacaacgcaccccgtggcgatcgtccagagcgcaccggt
gatcgtccggaccgtggtgatcgtgagcgtcgtgctccggttccattggccgaaggtcgt
gcccgttgccgtaccgcgctgggcgcgcgtgacggtatcgcggccaagaacctgctgggc
gccatcctcaacgaaggcggcctggcccgcgaagcgatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgagctgccggaagatggtctggagcgtctgctgaccaagctgaag
gacactcgcgttgccggcaagcagttgaagctgcgtcgctatcgcgaagattga
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