Pseudomonas silesiensis: PMA3_08660
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Entry
PMA3_08660 CDS
T05412
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psil
Pseudomonas silesiensis
Pathway
psil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PMA3_08660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psil03400
]
PMA3_08660
Enzymes [BR:
psil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PMA3_08660
DNA repair and recombination proteins [BR:
psil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PMA3_08660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
DUF7267
Motif
Other DBs
NCBI-ProteinID:
ANJ55226
UniProt:
A0A191YR76
LinkDB
All DBs
Position
complement(1912243..1915692)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLVTADSQSAERLEQELGF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIAALYRLPELSHGVLVVPITTALHRLAPT
RFLLGSSLVLDIGQKLDVEQMRTRLEASGYRYVDTVYEHGEFTVRGSLIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDTVRLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPARPLLPPAELFLPVEDCFARLKAWPRVVASQQDVETGVGRERFPARELPNL
AIEAKASQPLAALAGFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KERLAITIAPLDEGLVLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDSQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFEDPKADYATFSAGFP
FEETPDQQTTIEAVRSDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEDGLKDLQVEMIDRFGLLPEPTKNLMRITALKLQAELLGIKKV
DGGPQGGRIEFATQTPVDPLTLIKLIQSQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FERLIPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccattgccgaggctgccagcgcagccaagcgcttt
accctgctcgtgaccgccgacagccaaagtgccgaacggctggaacaggagctgggcttc
ttcgccccggatttgcccgtgctgcatttcccggactgggaaaccctgccctacgacctg
ttctcgccacaccaggacatcatttcccagcgcatcgccgccctgtaccggctgccggag
ctgagtcatggcgtgctggtggtgccgatcaccacggccctgcatcgcctggcgccgacg
cgattcctgctcggcagcagcctggtgctggacatcggccagaaactcgacgtcgagcag
atgcgtacccggctcgaggccagcggctatcgctacgtcgacacggtgtacgagcacggc
gaattcaccgtgcgcggctcgctgatcgacctgttcccgatgggcagcaaactgccctat
cgcatcgacctgttcgacgacgaaatcgagaccctgcgcaccttcgatccggaaaaccag
cgctccatcgacaaggtggacaccgttcgtctgttgccggcgcgagagtttccgctgcaa
aaggatgcggtcacgcgcttcaaggcgcggttccgcgagcgcttcgatgtcgacttccgg
cgctgcccgatctttcaggacctgagcagcgggatcaccccggccggtatcgagtattac
ctgccgttgttcttcgacgaaacctcgacgctgttcgattacctgccccaggacacgcaa
gtgttctccctgccgggcatcgagcaggcggcggaaaacttctggaacgacgtgcgcaat
cgttacgaagagcgtcgcgtcgatccggcacgtcctttattgccccccgccgagctgttc
ctgccggtggaagactgctttgcgcgcctgaaggcctggccgcgggtggtcgccagccaa
caggacgtggaaaccggcgtcggccgcgaacgcttccccgctcgcgaactgccgaacctg
gccatcgaagccaaggctagccaaccgctggcggccctggcgggtttcctcgacgagttc
cccgggcgcgtgctgttcaccgccgagtccgcgggccgtcgcgaagtgctgctggaattg
ctcgagcgcctgaagcttcgcccgaaaaccgtcgacagctggccggactttgtcgccagc
aaagagcgcctggcgatcaccatcgcgccactcgacgaaggcctggtgctcgacgacccg
gccctggccctggtcgccgaaagcccgttgttcggccagcgcgtgatgcagcgccggcgt
cgcgaaaaacgcgccgatgccaacaacgatgcggtgatcaagaacctcaccgaactgcgc
gaaggcgcaccggtggtgcacatcgaccacggcgtcggacgttacctgggcctgaccatt
ctcgagatcgacagccaggccgcggaattcctgaccctcgaatacgccgaaaacgccaag
ctgtacgtgccggtggccaacctgcacctgatcgcccgctacactggcagcgacgatgcc
ctggccccgctgcaccgcctcggttccgaaacctggcagaaagccaagcgcaaagccgcc
gaacaggtgcgcgacgtggccgccgaactgctcgacatctatgcccgccgcgccgcccgc
gaagggtatgccttcgaagacccgaaagccgattacgcgaccttcagcgccggcttcccg
ttcgaagaaactccggaccagcaaaccaccatcgaggcggtgcgcagcgacatgctcgcg
cccaagccgatggatcgcctggtctgcggcgacgtcggtttcggcaagaccgaagtggcg
atgcgcgccgccttcatcgcggtgcacggcggtcgtcaggtggcgatcctggtgcccacc
accctgctcgcccagcaacactacaacagcttccgcgaccgcttcgccgactggccggtg
accgtggaagtgatgagccgcttcaagtcgaccaaggaagtcaacgccgcggttgccgac
ctggccgaaggcaagatcgacatcgtcatcggcacccacaaactgctgtccgacgatgtg
aagatcaaaaacctcgggctggtgatcatcgacgaagagcaccgcttcggtgtgcgccag
aaggaacagctcaaggccctgcgcagtgaagtcgacatccttaccctgaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcccgtcgcctgtcggtgcggaccttcgtcatggagcagaacaaaagcacggtc
aaggaggccctgctgcgtgagttgctgcgtggcggccaggtctattacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgacctcgccgaactggtgccggaagcgcggatc
ggcatcggccacgggcagatgcgcgaacgcgatctcgaacaggtaatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgggccgacaagttcggcctggcgcagctgcaccag
ttgcgcggccgggtcggtcgcagtcaccaccaggcctacgcctacctgctgaccccgccg
cgccagcagatcactcccgacgcggaaaagcgcctggaggcgatcgccaacacccaggac
ctgggcgcgggcttcgtgctcgccaccaacgacctggaaatccggggcgccggcgaactg
cttggcgacgggcagagcgggcagatccaggccgtcggcttcaccctgtacatggaaatg
ctcgagcgcgcggtgaagtcgatccgcaagggcgaacaacccaacctcgatcagccgctg
ggcggtggtccggaagtcaatctgcgggtaccggcgttgattcccgaagactatctgccg
gacgtgcacgcgcgactgatcctgtacaaacgcatcgcctcggccaccgatgaggatggc
ctcaaggacctgcaagtggagatgatcgaccgtttcggcctgttgccggaaccgaccaag
aacctgatgcgcatcaccgcgctgaaattgcaggccgagttgctgggcatcaagaaagtc
gacggcggcccgcaaggcggccggatcgagtttgccacccaaaccccggtcgacccgctg
accctgatcaagctgatccagagccagcccaaacgctacaaattcgaaggcgcgacgatg
tttaaattccaggtgccgatggagcgcccggaagagcgctttaatactgtagaggcgctg
ttcgagcgcctcattccgaaaactgcttga
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