Pseudomonas silesiensis: PMA3_11010
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Entry
PMA3_11010 CDS
T05412
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psil
Pseudomonas silesiensis
Brite
KEGG Orthology (KO) [BR:
psil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psil03016
]
PMA3_11010
Enzymes [BR:
psil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PMA3_11010
Transfer RNA biogenesis [BR:
psil03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PMA3_11010
Prokaryotic type
tRNA splicing ligases
PMA3_11010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ANJ55645
UniProt:
A0A191YRX4
LinkDB
All DBs
Position
2408631..2409857
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AA seq
408 aa
AA seq
DB search
MQVTTWQLLEVRDGKPIKLWTEGVPVESEARQQLINTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTTLTAADLPDNLHALRSAIEKAVPHGRTLSRG
RRDEGAWHSVPKQADQAWAALDQRFKAITAKYPKLASTNNRHHLGTLGSGNHFIEVCLDE
ADRVWLMLHSGSRGVGNAIGNLFIQLAQADMRQHLANLPDRDLAYFKEGSRHFADYVEAV
GWAQDFARQNRALMMQAVIGAARQVIRKPFEVALEAVNCHHNYVQKEQHFGEDVWVTRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEQSFCSCSHGAGRTMSRTKAKNTFTVDDQIRA
TAHVECRKDASVIDEIPMAYKDIDKVMQAQRELVEVVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtaactacctggcaattgctggaagtacgcgacggcaagccgatcaagctctgg
accgagggcgtcccggtcgaaagcgaagcccgacagcaactgatcaacactgcgaagatg
ccgttcatcttcaaacacctggcggtcatgcccgatgtgcacctgggcaaaggctcgacc
attggcagcgtgatccccaccgtgggcgcgatcattccggccgccgtcggggtcgacatc
ggttgcggcatgatcgccgcgcgcaccacgctgaccgccgccgacttgcccgacaacctg
cacgcgctccgtagcgccatcgaaaaggccgtaccccacgggcgtacattgagccgaggt
cgccgcgacgaaggcgcgtggcacagcgtgccaaagcaggcggaccaggcctgggcggcg
ctcgatcaacggttcaaggcgattaccgccaagtacccgaaactggccagcaccaacaac
cgccaccatttgggcaccctgggcagcggcaaccatttcatcgaggtctgcctggacgaa
gccgacagggtctggttgatgctgcacagcggctcgcgcggcgtcggtaacgccattggc
aacctgttcattcaattggcccaggcggacatgcgccagcacctggccaatctgccggac
cgcgacctggcttatttcaaagaaggcagtcggcatttcgcggactacgtcgaagcagtg
ggctgggcccaggatttcgcccggcaaaaccgggccttgatgatgcaggcggtaatcgga
gccgcgcggcaggtgatacgcaagccattcgaagtggcgctggaggccgtcaactgtcat
cacaactatgtgcagaaggagcagcatttcggcgaggacgtgtgggtcacccgcaagggc
gcggtgtcggcgaaaaaaggcgagcttgggatcattcccggctccatgggggcgaaaagc
ttcatcgtccgcggcttgggcaatgagcaatcgttctgctcctgcagccacggcgccggc
cgcaccatgagccgtaccaaagcgaaaaacaccttcaccgtcgacgatcagatccgcgca
acggcccatgtggagtgccgcaaggatgcgtcggtgatcgatgaaattccgatggcctac
aaggatatcgacaaggtcatgcaggcgcagcgcgagctggtggaagtggtgcataccctg
cgtcaggtggtctgtgttaaaggttag
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