Pseudomonas silesiensis: PMA3_22350
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Entry
PMA3_22350 CDS
T05412
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
psil
Pseudomonas silesiensis
Brite
KEGG Orthology (KO) [BR:
psil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psil03016
]
PMA3_22350
Enzymes [BR:
psil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PMA3_22350
Transfer RNA biogenesis [BR:
psil03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PMA3_22350
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
ANJ57751
UniProt:
A0A191YYE2
LinkDB
All DBs
Position
complement(5055763..5056896)
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AA seq
377 aa
AA seq
DB search
MAIDIHWIRDNDSLGRFCTEWQQLPFVALDTEFMRVDTFYPIAGLLQIGDGVRAYLIDPL
TIDDWQPLAALLENPAVVKVLHACSEDLEVLLRLTGSLPASLFDTQLAAAYLNLGFSMGY
SRLVQEVLGIDLPKGETRSDWLQRPLSETQISYAAEDALHLAEVFVQLRPKLSDDKYAWV
LEDGAELVANLRREIDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREARARDLPRNRIV
REHSLWPLARTQPDNLGALAKIEDMHPRTVRQDGEFLLDLIKRSGSVSPDQWPAAVPEPL
PVEAAALVKQLRSIGQAEAERLNIAPELMLRKKTLEALLKSGFPNGPYQLPDSLRGWRRE
LMGQALLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacaacgatagcctcggtcggttttgcaccgag
tggcagcagctgccgttcgttgccctcgacaccgaattcatgcgggtcgacaccttttat
ccgattgcaggcctgctgcagatcggcgatggcgtacgcgcttacctgattgacccgctg
accatcgacgactggcagccgctggccgcgttgctggaaaacccggccgtggtcaaagtc
ctgcatgcctgcagcgaagacctcgaagtcctgttgcgcctgaccggtagcctgccggcg
tcgctgttcgacacccaactggccgccgcttacctgaacctgggtttctccatggggtat
tcgcggctggtgcaggaagtgctcggtatcgacctgcccaagggcgagacccgttccgac
tggctgcaacgcccgctttccgagactcagatcagctacgccgccgaagatgccctgcac
ctggcggaagttttcgtacagttgcgtccgaagctgtctgacgacaagtacgcctgggtt
ctggaagacggcgccgagctggtggccaacctgcgccgcgaaatcgacccgtacgaggtc
tatcgcgatgccaagctggcctggaaactgtcccgcgcccaactcgccgtattgcgtgaa
ctctgcgcctggcgcgagcgcgaggcccgcgcccgcgatctgccgcgcaatcgcattgtc
cgtgagcactccctgtggccgctggcgcgaactcagccggacaacctgggcgcgctggcg
aaaatcgaagacatgcacccgcgtaccgtgcgtcaggacggcgagtttctgcttgatctg
atcaagcgctctggcagtgtgtcgccggatcaatggccggctgccgtgccggagccgttg
ccggtggaggccgccgcgctggtcaagcaactgcggtcgatcggccaggccgaagccgag
cgtctgaacattgcgccggaactgatgctgcgcaagaaaaccctggaagcgctgctcaag
agcggtttccccaatggtccctatcaattgcctgattcgctgcgtggctggcgccgcgaa
ttgatgggccaggcgctgctcgacagcctggccaccgccggagaacagccttga
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