Pseudomonas silesiensis: PMA3_23385
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Entry
PMA3_23385 CDS
T05412
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
psil
Pseudomonas silesiensis
Pathway
psil03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PMA3_23385 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psil03400
]
PMA3_23385 (sbcB)
Enzymes [BR:
psil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PMA3_23385 (sbcB)
DNA repair and recombination proteins [BR:
psil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PMA3_23385 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PMA3_23385 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PMA3_23385 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ANJ57943
UniProt:
A0A191YYW5
LinkDB
All DBs
Position
complement(5264327..5265757)
Genome browser
AA seq
476 aa
AA seq
DB search
MTSIFWYDYETTGINPRCDRPLQVAGIRTDFELNEIDEPVNLYCQPSDDILPHPAACAIT
GITPSQLAGQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE
WQGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGRVTLKLERLSAANGIDHGHAHEALSDV
RATIALARLIREKQPKLYDWLFQLRGKQKVMDQIRLLQPIVHISGRFSAARNYVGVVLPL
AWHPRNKNALIVCDLHMDPQGLLDLSAEALRQRLYTRRDELADGELPAPLKLIHINKCPV
VAPLSVLRPEDQQRLGLDMALYQARALRLSDAQSVWRDKVQAIYASEEFTPSQDPEQQLY
DGFIGDRDRRLCEQVRASDPAQLAQAQWPFDDERLPELLFRYRARNFPDTLSSEEQQRWR
IFCQKRLSAPEWGAPNTLETFVEAAAQLSATATSFQRGVLNDWHNYVQELRQRLNL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgacctccatcttctggtacgactatgaaaccactggcatcaacccccgttgcgaccgt
ccgctgcaagtggcgggcattcgcactgactttgaactcaatgaaatagacgagccagtc
aatctttactgtcagcccagtgatgacatcctgcctcaccccgccgcctgcgcgatcacc
gggatcacgccgagccaactggccgggcagggcttgagcgaagccgatttcatgacccgg
gtgcacgcccagctggctgcgcccggcacctgcggggccggctacaacaccttgcgtttc
gacgacgagatgacccgttacagcttgtaccgcaattttttcgacccctacgcgcgtgag
tggcaaggcggcaacagccgctgggacctgatcgatgtggtgcgtgcggcttacgccttg
cgccccgatggcctcgtttggccgacggacgacgagggccgggtgacgctcaagctggag
cgcctgagcgccgccaacggaatcgatcacggccatgcccatgaagcgctgtcggacgtt
cgcgccacgatcgcccttgcgcggctgatccgcgagaagcagccgaagttatacgactgg
ctgtttcaattgcgcggtaaacagaaggtgatggatcagattcgactgttgcagccgatc
gtacatatctccggacgcttttcggccgcgcgcaactatgtcggggtggtgctgcccctg
gcatggcatccgcgcaacaagaacgccctgattgtctgcgacttgcacatggatccccag
ggcttgcttgacctgagtgccgaagccttgcgccagcggttgtatacccgtcgcgatgag
ctggccgatggcgagttgcctgcaccgctcaagctcatccacatcaataaatgtcccgtg
gtggcgccgctgtcggtgctgcgtcccgaagatcagcaacgcctgggactggacatggcg
ctctaccaggcgcgcgcgctgcgactcagtgacgcacaatcagtctggcgagataaagtt
caggccatttatgccagcgaggaattcacgccgagccaggatcccgagcaacagttatac
gatggttttatcggtgatcgcgatcggcgtctttgtgagcaagtccgggcgtcggacccg
gcacaattggcacaagcacagtggcctttcgatgatgaacgcttgccagaattattgttt
cgttatcgcgcacgtaacttccccgatacgttgagttccgaagagcaacagcggtggaga
atattctgtcagaaacgtctgtcagcccccgagtggggggcgcccaataccctggaaact
ttcgtagaagccgcagcccaattgagcgctactgctacatcctttcagcgaggggtgttg
aatgattggcataattatgttcaggaattacgccaacgtttgaatctttga
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