Pseudomonas silesiensis: PMA3_25875
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Entry
PMA3_25875 CDS
T05412
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
psil
Pseudomonas silesiensis
Pathway
psil03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PMA3_25875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psil03400
]
PMA3_25875
Enzymes [BR:
psil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PMA3_25875
DNA repair and recombination proteins [BR:
psil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PMA3_25875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
AAA_30
AAA_11
AAA_25
AAA_12
Motif
Other DBs
NCBI-ProteinID:
ANJ58414
UniProt:
A0A191Z074
LinkDB
All DBs
Position
complement(5831088..5834777)
Genome browser
AA seq
1229 aa
AA seq
DB search
MTTKTPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGEPSGFGRELLPPQILV
VTFTDAATKELRERIRTRLAEAARFFREETPAPDALIAELRDQYLPEQWSGCANRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRMFCYPMQGD
ALNWVRSNWGGPAALLPRVRGLFASERDNVAGKAPAELIAQCLVERRAALLELKMPWRQW
ADELLALCHQGVASKSVDGRKMQARYFEPWFEKIKAWAEDESLEQLDIGTGFMRLTPDGM
AEAWKGEAPRHPGLEAMPGLKLSLDGLPTPDAAVLQHAAQWVGARFEEEKRRRAEMGFDD
MLLRLDAALQAEGGERLATLIREQFPVALIDEFQDTDPVQYRIFESIYRIEDNNPESGLF
LIGDPKQAIYAFRGADIYTYLRARQATAGRLHTLGTNFRSSHGMVSAVNHVFERAESREA
GRGAFLFREQNGENPVPFLPVASQGRKEVLHIEGRAVPALNVWHLSAEQPLSGVVYRQQL
AAACASEITALLNGGQQGRAGFIQDGKDFRGLLPADIAILVRDGKEAQAVRAELSARGVR
SVYLSDKDSVFAAQEAHDVLTWLKACAEPDVERPLRAALACITLNLSLAELERLNQDELA
WEARVMQFRGYRELWRKQGVLPMLRRLLHDFRLPQALIARSDGERVLTNLLHLSELLQQA
AAELDGEQALIRHLSEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFI
CSAKPVDGSRLPLHYHDASGKAQVTLKPTAELIALADDERLAEDLRLLYVALTRAQHACW
LGVTDLKRGNNHSSVLHLSALGYLLGGGAPLAESAGLKRWLQDLQQDCPALSFGDMPEAS
AEHYHPPHNEAALLAARIPRRKASENWWIASYSALRIGERLSEGSDEAPESPQAQKLFDD
ERLDPHAPRDVVAGGADIHRFPRGPGPGTFLHGLLEWAGDESFAATPQAVEDAIARRCNR
RGWEGWITALSDWLQHLLKSPLPVGAGQSPVVLGQLSQYRVEMEFWFASHKVDVLKLDEL
VRQYTHNGAARVAAEPVMLNGMFKGFIDLTFEHDGRYYVADYKSNWLGVDDTAYTGQAME
QSILDNRYDLQYVLYLLALHRQLKARLADYDYDRHVGGALYLFLRGTRAPSQGVYFTRPP
KELIERLDRMFQGKPEPKAEAAWVQGELL
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgaaaacaccgctggccctggccttcccgctgcgtggcagccaactgatcgaa
gccagcgccgggaccggcaagaccttcaccatttccgccctctacctgcgcctggtcctg
ggccacggtggcgaaccgagcgggttcggacgagagctgttacccccgcaaatcctcgtc
gtgaccttcaccgatgcggccaccaaagaattgcgcgaacgtattcgcacgcgtctggcc
gaggctgcgaggttcttccgcgaggaaaccccggcaccggacgcgctgattgccgagctg
cgcgatcagtacctgcccgagcagtggtccggctgcgcaaaccgcctggatatcgccgcc
cagtggatggacgaagccgccgtttcgaccatccacagttggtgccagcgcatgttgcgc
gaacacgcgttcgacagtggcagcctgttcacccagaccctggaaaccgatcacagcgat
ttgctcggtgaggtcctgcgcgattactggcgaatgttctgctacccgatgcaaggcgat
gcgctgaattgggttcgcagcaactggggcggcccggcggccttgttgccgcgagtacgt
gggctgtttgccagcgagcgcgacaatgtcgcgggtaaagcgcccgccgagctgatcgcg
caatgcctggtggaacgacgggccgccttgctcgaactcaagatgccctggcgccagtgg
gcggatgagctgcttgctctgtgtcaccaaggtgttgcgagcaagagcgtcgacgggcgc
aagatgcaggcgcgttacttcgaaccctggttcgaaaaaataaaagcctgggccgaagac
gaatccctcgaacaactggatatcggcaccggcttcatgcgcctgacgcccgatggcatg
gctgaagcctggaagggtgaggcgccccgtcatcccggcctggaggcgatgcccggcctc
aagctcagcctcgatggattgccgacgcccgatgcggcggtcctgcaacatgcggcccaa
tgggtgggtgcgcggttcgaagaagagaaacgccggcgcgcggagatgggcttcgatgac
atgctgctgcgcctcgatgccgccttgcaagccgagggcggcgagcgcctggccaccttg
atccgcgagcagtttccggtggcgctgatcgacgaattccaggacaccgacccggtgcaa
taccggatcttcgaaagcatctatcgcattgaagacaacaaccccgaaagcggcctgttc
ctgatcggcgacccgaagcaggcgatctatgccttccgtggtgccgacatctatacctac
ttgcgcgcccgccaggccaccgctggccgcctgcataccctgggcaccaacttccgctcc
agccatggcatggtcagtgcggtgaaccatgtgttcgagcgtgccgagtcgcgcgaggcc
gggcggggcgctttcctgtttcgtgaacagaacggcgagaacccggtgccgttcctgccc
gtcgcctcccagggccgcaaagaagtgctgcacattgaaggccgggctgtccccgctctg
aatgtctggcacctgtctgccgaacagcccctctccggcgtggtgtaccggcaacaactg
gccgccgcgtgcgccagtgaaatcacggcgttgctcaacggcgggcaacaagggcgcgcc
ggcttcatccaggacggcaaagactttcggggcctgttgccggcggatatcgcgatcctg
gtgcgcgacggcaaggaagcccaggccgtgcgcgccgaactctcggcccggggcgtgcgc
agcgtttacctgtcggacaaggattcggtgttcgccgcccaggaagcccacgatgtattg
acctggctcaaggcgtgcgccgagccggatgtcgagcgtccactgcgggcggcgctggcg
tgcatcacgctgaacctgtcgctggctgaacttgagcggttgaatcaggacgaactggcc
tgggaagcccgggtcatgcagttccgcggttatcgcgagctgtggcgcaagcagggcgta
ttgcccatgctgcggcgcttgctgcatgacttccgcttgccccaggcactgatcgcgcgc
agcgatggcgagcgcgtgttgaccaacctgctgcacctgtccgagttgctgcaacaggcc
gctgccgaacttgatggcgagcaggcgctgatccggcatctgtccgagcacctggcgttg
tccgggcaggcgggcgaagagcagattttgcgcctggagagcgatgagcaattggtcaag
gtggtgaccattcacaagtccaagggacttgagtaccccttggtgttcctgccgttcatt
tgttcggcgaagccggtggatggcagccgtctgccattgcattaccacgacgccagcggc
aaggcccaagtgaccttgaagccgacggccgagttgattgccctggccgatgacgagcgc
ctggccgaggatctgcggctgctctatgtggccctgacccgggcgcaacatgcttgctgg
ctcggggtgaccgacctcaagcgcggcaataaccacagctcggtgctgcacctgtcggcc
ttgggttatctgctggggggcggggcgccattggctgagtcggccgggttgaagcgttgg
ctgcaagacctgcagcaggattgcccggcattgagcttcggtgacatgcctgaagcgagc
gccgagcattaccatccgccacacaacgaagcggcactgctcgctgcgcggatcccccgg
cgcaaggccagtgaaaactggtggatcgcttcttacagtgccttgcgcattggcgagaga
ctgagcgagggcagtgacgaagctcccgaaagtcctcaagcgcaaaaactcttcgacgac
gaacgcctcgatccgcatgcaccgcgagacgtggtggccggcggcgcggacatccatcga
ttcccccgtggcccaggccccggtacgtttctgcatggcttgctggagtgggccggcgac
gaaagttttgccgccacgccgcaagcggtggaagacgccattgcccggcgctgtaaccgg
cgcggctgggaaggctggatcactgccctgagtgactggctgcagcatctgctcaaatcg
ccgctgcctgtcggtgccggacagtcgccggtggttctcggccaactgagccaataccgc
gtcgagatggaattctggttcgccagccacaaggtcgatgtgctcaagctcgatgaactc
gtgcgccaatacacccacaacggcgcggcgcgggtggcggccgaaccggtaatgctcaac
ggcatgttcaagggcttcatcgacctgacattcgagcacgacggccgttactacgtcgcc
gactacaaatccaactggctgggtgtcgatgacacggcctacaccgggcaggccatggag
cagtcgatcctcgacaaccgttacgacctgcaatacgtgctgtacctgctggccctgcac
cgtcagctcaaggcgcggcttgccgattacgattacgaccggcatgtcggcggtgcgctg
tacctgttcctgcggggaacgcgcgcacccagccagggcgtgtacttcacccgtccgcca
aaagaactgatcgagcgcctggaccggatgttccagggcaagccagagcccaaggcagaa
gcggcctgggtacagggagaattgctatga
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