Pseudomonas silesiensis: PMA3_27280
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Entry
PMA3_27280 CDS
T05412
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psil
Pseudomonas silesiensis
Pathway
psil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PMA3_27280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psil03021
]
PMA3_27280
03400 DNA repair and recombination proteins [BR:
psil03400
]
PMA3_27280
Enzymes [BR:
psil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PMA3_27280
Transcription machinery [BR:
psil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PMA3_27280
DNA repair and recombination proteins [BR:
psil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PMA3_27280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
Motif
Other DBs
NCBI-ProteinID:
ANJ58662
UniProt:
A0A191Z0H7
LinkDB
All DBs
Position
complement(6146951..6151150)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVSGTRIVETTVGRALLFQVVPPGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIINAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEEVIVPGGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGCLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGTDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSTFIKGDQMELTHVLVENERLAGDEKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgctcatggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggtctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggtgtgatctgcgagaagtgcggcgttgaagtcgcactggccaaagttcgtcgtgag
cgcatggcgcacatcgaactggcctcgccagttgcccacatctggtttctgaaatcgctg
ccgtcgcgtatcggcttgctgatggacatgaccctgcgtgatatcgagcgcgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccacccttgaaaaaggtcagctgctc
aacgacgagcagtacttcgaagcgctggaagagttcggcgacgatttcgatgcccgcatg
ggtgccgaagctgtccgtgaactgctgcacgctatcgacctggaacacgagattggccgt
ctgcgtgaagaaattccgcaaaccaactccgaaaccaaaatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaaccttccagaatggatggtgctgacc
gttctgccggttctgccgccagatctgcgtccactggtcccgctggatggcggtcgcttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgcttgaag
cgtctgctcgatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagccgtcgacgcactgctcgacaacggtcgtcgtggccgcgctatcaccggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaaacaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggctctcgagctgttcaaaccgttc
attttcggcaagctggaaatgcgtggtctcgctaccaccatcaaagctgccaagaagatg
gtcgaacgcgagctgccagaggtttgggacgttctcgctgaagtgatccgtgaacacccg
gttctcctcaaccgtgcaccgacccttcaccgtttgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgacccgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgcggatctgcaagaagttgaccgtgtgttccgtgccggc
gaagccgcactgcacgccaaggtcaaagtgcggatcaacgaaaccgtcaacgaccgtgat
ggcggcagcgtaagcggcactcgtatcgtcgaaaccactgtcggccgtgcgctgttgttc
caggttgttccacctggcctgtcgtacgacgtcgtcaaccagccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcttactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcaatgctgctactgatgaa
gtgaaagagatcgaaagtcagtatgcctccggcctggtaacccagggcgagaagtacaac
aaagtgatcgacctttggtccaaggcgaacgacgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgtcatggcgtcgaagtcgaccaggaatccttcaac
tcgatgtacatgatggccgactcgggcgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggttccatcatcgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctccactcacggtgctcgt
aaaggtttggcggataccgcgttgaaaactgcgaactccggttacctgactcgtcgtctg
gtagacgtggcgcaggatctggtggtgaccgagatcgattgcggcaccgaacatggcctg
gtcatgacgccgcacattgaaggcggtgacgttgtcgagccgttgggtgagcgcgtattg
ggtcgtgtcattgcccgtgacgtattcaagccgggtaccgaggaagttattgttcctggt
ggcacgctggtagacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcagctgcgaaacccgctacggcatttgcgccaagtgctacggc
cgtgacttggctcgtggtcaccaggtgaacatcggtgaagcggtcggcgttattgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcagccgacagcgttcaggtgaagaatggcggtaccgtccgtctg
cacaacctgaaacacgttgagcgagtggatggttgcctggttgctgtgtcccgttccggt
gagctggcaatcgctgatgacttcggtcgtgagcgcgagcgttacaagctgccgtacggt
gctgtgatttcggttaaagaaggtgacaaggtcgacgctggcgcaatcgtggccaagtgg
gatccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgccaaagaccgtccagctgccggtaaagatatccgtcctgctgtgaagatg
gttgatgacaacggcaaggatctcttgctgccgggtaccgacgtaattgctcagtacttc
ctgcctgctaacgccctggttggtgtagcggatggtgcgaagattgcgatcggtgatgtt
atcgctcgtatcccgcaagagacttcgaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagcccgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaaaggcaaacgccgtctggttatcactccgaac
gacggcactgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgtgaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagtcgaaatcgctgaatccggcgactcgactttcatcaagggcgaccagatg
gagttgactcacgttctggtagagaacgagcgtctggctggcgacgagaaattcgtttcc
aagttcactcgtgtgttgctgggtatcaccaaggcgtcgttgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccactcgcgtactgaccgaagcggcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcttaccacagcgagcgcaagcgccgccgtgatgctgacaaaccgttgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaactcgagcggtaactga
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integrated database retrieval system
