Pseudomonas silesiensis: PMA3_27620
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Entry
PMA3_27620 CDS
T05412
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psil
Pseudomonas silesiensis
Pathway
psil02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psil00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PMA3_27620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psil03021
]
PMA3_27620
Transcription machinery [BR:
psil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PMA3_27620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
ANJ58721
UniProt:
A0A191Z1A2
LinkDB
All DBs
Position
6220209..6222056
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AA seq
615 aa
AA seq
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MSGKAQQQSRIKELITLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEV
APDKDSLMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE
VPPPVDPKAVKADDDTDDDDADATDDEEEAESGPDPVIAAQRFGAVSDQMEITRKALKKH
GRGNKLAIAELIALAELFMPIKLVPKQFEGLVERVRSALDRLRQQERAIMQLCVRDARMP
RADFLRQFPGNEVDESWTDALAKGKSKYAEAIGRLQPDIIRCQQKLTALQTETGLTIAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcacacttggtcgtgag
cagggctacctgacttacgcggaggtcaacgaccacctgccggaggatatttcagatccg
gaacaggtggaagacatcatccgcatgatcaatgacatggggatcaacgtattcgaggtt
gcgccagataaggattcccttatgctggccgacgccgataccgacgaagccgcggccgaa
gaggcagcagcagcgttggcagcggtcgagaccgacattggtcgcaccaccgacccggtg
cgcatgtacatgcgcgaaatgggtacggtagagctcctcacacgtgaaggcgaaattgaa
atcgccaagcgtattgaagagggcatccgcgaagtgatgggcgcaatcgcgcacttccct
ggcacggttgaccatattctctccgaatacactcgcgtcaccaccgaaggtggccgcctg
tccgacgtcctgagcggttatatcgacccggacgacggcattgcgccgcctgcagcggaa
gtgccaccgcctgtcgatccgaaagccgtgaaagcggacgacgacaccgacgacgatgac
gccgacgccaccgacgacgaagaagaagccgaaagcggtccggatccggtcatcgcggca
cagcgttttggcgctgtctccgatcagatggaaatcacccgcaaggcgctgaagaagcac
gggcgtggcaacaagctggcaatcgccgagctgattgccctggccgagctgttcatgccg
atcaaactggttccgaagcaattcgaaggcctggtcgagcgtgttcgcagtgccctggat
cgtctgcgtcagcaagagcgcgcgatcatgcaactttgcgtgcgtgatgcccgtatgccg
cgtgccgacttcctgcgccagttcccgggcaatgaagtcgacgaaagctggaccgatgca
ctggccaaaggcaaaagcaaatacgctgaagccattggtcgcctgcagccggacatcatt
cgttgccagcagaagctgaccgcgctgcaaaccgaaaccggtttgacgattgccgagatc
aaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaagag
atggttgaagccaacttgcgtctggtgatctccatcgccaagaagtacaccaaccgtggc
ctgcaattcctcgatctgatccaggaaggcaacatcggcttgatgaaagcggtagacaag
tttgaataccgccgtggctacaaattctcgacttatgccacctggtggatccgtcaggcg
atcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatcgag
acgatcaacaagctcaaccgtatttcccgccagatgttgcaggaaatgggtcgcgaaccg
accccggaagagctgggcgaacgcatggaaatgcctgaggacaagatccgcaaggtattg
aagatcgctaaagagccgatctccatggaaaccccgatcggtgatgacgaagactcccat
ctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgtcgccaccgttgag
agccttaaagaagcgactcgcgaagtactgtccggcctcactgcccgtgaagccaaagtg
ctgcgcatgcgcttcggtatcgacatgaataccgaccacaccctcgaggaggttggtaag
cagttcgacgtgacccgtgagcggattcgtcagatcgaagccaaggcgctgcgcaagctg
cgccacccgacgagaagcgagcatctgcgctccttcctcgacgagtga
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