Pseudomonas silesiensis: PMA3_28270
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Entry
PMA3_28270 CDS
T05412
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psil
Pseudomonas silesiensis
Pathway
psil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMA3_28270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psil03019
]
PMA3_28270
Enzymes [BR:
psil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PMA3_28270
Messenger RNA biogenesis [BR:
psil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PMA3_28270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ANJ58843
UniProt:
A0A191Z1K3
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All DBs
Position
6375851..6377731
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AA seq
626 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTRQKIADGDLMGFDSSAVEAEKPEVRERPDVRNPRNPRGPRGDGPNGTGGGGG
RKDKGKDKGGKEKPAAAGRGERPAREQKPREGTPAREQQRPAPRAAADRAPDEFLDDDVD
NFGNRVDYVPQAKPAQGRGRRPGAPAPGAAAGAGAGAPRGGKPQGRQSGPRSSDGATTGT
PPAKRSGPRNGAPRDGQARREESRNRRPARSDDKPLSEPAVQNPRGPAPKIIHKESKTDR
FPTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagacaggtacgggtaaaaccggcggcttcgcccttccgatcctg
gaacggttgttccccaacggtcatccggacaagtcccagcgtcacggcccgcgtcaaccg
cgcgtactggtcctgacccctacccgcgaactcgcggctcaagtgcatgaaagcttcaag
gtctatgcccgtgacctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggttcaggccatgtcccgcggtgtcgacgtgctggtggcttgccccggccgtctg
ctcgacctcgccggccaaggcagcgtcgacctgtcccacgtggaaattctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaagaaggtcctggcccgt
ctgccgagcaaacgtcagaacctgctgttctcggcgaccttctccaaagacatcaccgac
ctcgccggcaagctgctgcacaacccggaacgcatcgaagtcacgccgccgaacaccacg
gtcgagcgtatcgaacagcgcgtgttccgtctgccagccaatcacaagcgttcattgctg
gcgcacttgatcaccgctggcgcctgggaacaggtgctggtgttcactcgcaccaagcac
ggcgccaaccgtctggccgaatacctggacaaacacggtctcaccgccgttgccatccac
ggtaacaagagccagaacgcccgcaccaaagccctggccgacttcaaggccggtgaagtg
cgcatcctggtcgccaccgacatcgccgctcgcggcctggacatcgaccagttgccccac
gtggtcaacttcgaactgccaaacgtcgacgaagactatgtgcaccgtatcggccgtact
ggccgtgccggtcgttcgggcgaggcgatctcgctggtggccccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgacccggcagaaaatcgccgacggcgacctgatgggcttc
gattccagcgcggtggaagccgagaaacctgaagtgcgcgagcgtccggatgtgcgtaac
ccgcgcaacccacgtggcccgcgcggcgacggtccgaacggcactggcggtggcggcggt
cgtaaagacaaaggcaaggacaagggcggcaaggaaaaacctgcggccgctggccgtggc
gagcgtccggcccgtgaacagaagccacgcgaaggcactccggctcgcgaacagcagcgt
ccggcccctcgcgccgccgctgatcgtgctccggacgagttcctggacgacgatgtcgat
aacttcggtaaccgtgtcgactacgtgcctcaagccaaaccggctcaaggccgcggtcgc
cgtccgggtgctccggcaccaggcgcggcagctggcgcaggcgcaggcgctccgcgcggc
ggcaagccacagggtcgtcagagcggtccgcgcagcagcgacggtgctaccaccggcacg
ccgccggccaagcgcagcggcccgcgcaatggtgctccacgtgacggccaggcccgtcgc
gaagagtcccgcaaccgccgcccggcccgtagcgacgacaagccgctctcggaaccggcc
gtgcaaaaccctcgcggtccagcgccgaagatcattcacaaggagtcgaaaaccgatcgt
ttcccgacacctgaacaacttgatcaactgccaggccgtccgcgcggtgagaaaccagcg
ttgctgacgcgcaatcgctga
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