Pseudomonas silesiensis: PMA3_29080
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Entry
PMA3_29080 CDS
T05412
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psil
Pseudomonas silesiensis
Pathway
psil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMA3_29080 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psil03021
]
PMA3_29080 (rho)
03019 Messenger RNA biogenesis [BR:
psil03019
]
PMA3_29080 (rho)
Transcription machinery [BR:
psil03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PMA3_29080 (rho)
Messenger RNA biogenesis [BR:
psil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PMA3_29080 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
ANJ59002
UniProt:
A0A191Z1G4
LinkDB
All DBs
Position
complement(6549597..6550856)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
YDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLVDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaaa
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctgcgctccgctgacgcttcctatctcgccggtccggacgacatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccaaaggaaggcgagcgttatttcgcactgctcaaggtcgacacgatcaac
tacgatcgtcccgagaacgcgaaaaacaagattctcttcgagaacctgaccccgctgttc
ccgaccgtgcgcatgaagatggaagccggcaacggttccaccgaagacttgaccggtcgt
gtcatcgacctgtgcgccccaatcggcaaaggccagcgcggtctgatcgttgcaccgccg
aaagccggtaaaacgatcatgctgcagaacattgcggcgaacatcgcgcgtaacaatcct
gaagttcacctgatcgtattgctgatcgacgaacgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctcgacgttcgacgagccgccaacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaaacgcctggtcgaacacaagaaagacgtg
gtgatcctgctcgactccatcacccgtctggctcgcgcctacaacaccgtgatcccgagc
tccggcaaagtgctcaccggtggtgtcgatgcccacgccctggagaaaccgaaacgtttc
ttcggcgccgcgcggaacatcgaagaaggcggttcgctgaccatcatcgccaccgcgctg
gttgaaaccggctcgaagatggacgaagtgatctacgaagaattcaaaggcacgggcaac
atggaactgccgctggatcgtcgcatcgctgaaaaacgtgtgttccctgcgatcaacatc
aaccgttccggcacccgccgcgaagagttgctgacggccgacgatgagttgcaacgcatg
tggatcctgcgcaagctgttgcacccgatggacgaaatcgcagccatcgagttcctggtc
gacaagctgaaaacgaccaagaccaacgatgagttcttcctgtcgatgaaacgcaagtaa
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