Pimelobacter simplex: KR76_09280
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Entry
KR76_09280 CDS
T03528
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psim
Pimelobacter simplex
Pathway
psim03420
Nucleotide excision repair
psim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KR76_09280
03430 Mismatch repair
KR76_09280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psim03400
]
KR76_09280
Enzymes [BR:
psim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KR76_09280
DNA repair and recombination proteins [BR:
psim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KR76_09280
MMR (mismatch excision repair)
Other MMR factors
KR76_09280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AIY19821
UniProt:
A0A0A1DQW9
LinkDB
All DBs
Position
1894490..1897741
Genome browser
AA seq
1083 aa
AA seq
DB search
MSTTIPMTIATPADLQRAMQAPFPPSDEQWAAISAPLRPAVVIAGAGSGKTTLMAARVVY
LVLTGQVRPEEVLGLTFTTKAAAELRQRIRTALRDAGALDLSGPASGPDEADEVLEPTVA
TYNAYASGLLTDHGLRIGHEPDTRVITDAARYQLGARAVDRFTGEIALLTDHPETAIQNL
LALDSAMSEHLVGPDDVLAHDAAARRGFERARDEELAGKGRKTYVDAVEKAISAIDRRGE
LLQLVASYRGLKRDLGLMDFSDQIELGARLAAERPEVGEIERGRFKVVLLDEYQDTSVAQ
AIMLSRLFSAPEPGQGLGHAVTAVGDPNQAIYGWRGASVANILNFAQTFPAADGTPTTYA
LTVNRRSDRRILDVASHLAEPLYDALETRGAGVARLRAPEGAVDGTVEARTFETQRDELA
WLAAEVRAAHGGDPGDWAHIGVLTRDNAHAELVFDALTTAGVPVEIVGLSGLLRLPEIAE
IVAVLRLLHDVTDNAALLTLLAGPRWAIGPRDLRLLGQRAGELAGRRGRSADVVTVSEQL
VAIADGIDPAEVPCLDDALADPGEGDFSAEARERFGLLRDELRLLRAAVGEPLLDLVRRI
IDVTGVDVELASAVSPAAAARRDNLDLFVKAVADFQAVDGDVSLPALLAYLTAEDDQGNG
LDIATPTEADSVKLLTVHRSKGLEWATVFCVGVCESRFPSAQGRTLWVSSPAVLPAALRG
DAADLPQLEGYDKAALDDYRRRSKAHEADEELRLGYVAFTRAAHRLAVSSFQWGPRKTPY
GPSAYQEAVREMLTAWDLAPEPWLTRPDKGAANPYDAEDPARPWPADGVGDEARLRLAAA
ALVGAADPDGPDPELDIVTAARVAEWDAEIEQLLAEARLASGAGGEVVVPMPASLSATAL
SRLRDDPQAFARELVRPMPRPPAPAARFGTRFHAWVEARFGQQGLFDPDELSGRADAGID
DEADLKELVAAFEEGPFGSRVPYAVEAPFALVLDAADGRRQVIRGRIDAVYAEPDGSFLV
VDWKTSARQEADPLQLAVYRLAWAELRGLPPERVRAGFYYVRRGELVVHDELAGREEVLS
LLG
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacgacgatcccgatgacgatcgcgacgcccgccgacctgcagcgggcgatgcag
gcgccgttcccgcccagcgacgagcagtgggccgcgatcagcgccccgctgcgcccggcc
gtggtcatcgccggcgccgggtccggcaagacgacgctgatggcggcgcgcgtggtctac
ctggtgctgaccgggcaggtccggcccgaagaggtgctcggcctgaccttcaccaccaag
gccgcggccgagctgcgccagcgcatccgcaccgcactgcgggacgccggggcgctcgac
ctcagcgggccggcgtccggtcccgacgaggccgacgaggtgctcgagccgacggtcgcc
acctacaacgcctacgcgtccgggctgctcaccgaccacggcctgcggatcggtcacgag
cccgacacccgggtgatcaccgacgccgcgcgctaccagctcggcgcgcgggcggtcgac
cggttcaccggcgagatcgcgctgctcaccgaccatcccgagaccgccatccagaacctc
ctcgcgctcgactccgcgatgagcgagcacctggtcggccccgacgacgtcctggcccac
gacgcggcggcccggcgcggcttcgagcgcgcccgcgacgaggagctggccggcaagggc
cgcaagacctacgtcgacgcggtcgagaaggcgatctccgcgatcgaccgccggggcgag
ctgctgcagctcgtggcgtcgtaccgggggctgaagcgcgacctggggctgatggacttc
tccgaccagatcgagctcggcgcccggctggcggccgagcggcccgaggtcggcgagatc
gagcggggccggttcaaggtggtgctgctcgacgagtaccaggacacctcggtggcccag
gcgatcatgctctcgcggctgttctccgcacccgagcccgggcaggggctggggcacgcg
gtgaccgcggtgggcgaccccaaccaggcgatctacgggtggcgcggtgcctcggtggcc
aacatcctcaacttcgcccagaccttcccggcggccgacggcacgccgaccacctacgcg
ctgaccgtcaaccgccgctccgaccggcgcatcctcgacgtcgcgagccacctggccgag
ccgctctacgacgcgctcgagacccggggcgcgggggtcgcgcggctgcgggcgcccgag
ggcgcggtcgacggcacggtcgaggcgcgcaccttcgagacccagcgcgacgagctggcc
tggctggcggccgaggtccgtgcggcccacggcggcgacccgggcgactgggcccacatc
ggcgtgctgacccgcgacaacgcccacgccgagctggtcttcgacgcgctgaccacggcg
ggcgtcccggtcgagatcgtgggtctgtccgggctgctccggctgcccgagatcgccgag
atcgtggcggtcctgcggctgctgcacgacgtcaccgacaacgccgcgctgctgacgctg
ctggccggcccgcgctgggccatcggtccgcgcgacctgcggctgctcggccagcgcgcc
ggcgagctggccggccggcggggacgctccgccgacgtcgtcaccgtctccgagcagctg
gtggcgatcgccgacggcatcgacccggccgaggtcccctgcctcgacgacgcgctggcc
gatcccggcgagggcgacttctccgccgaggcgcgcgagcggttcgggctgctgcgcgac
gagctgcggctgctgcgggcggcggtcggcgagccgctgctcgacctggtccggcggatc
atcgacgtcaccggcgtcgacgtcgagctcgcctcggcggtcagcccggccgcggcggcg
cggcgcgacaacctcgacctcttcgtcaaggccgtggccgacttccaggccgtcgacggc
gacgtctcgctgccggcgctgctggcctacctcaccgccgaggacgaccagggcaacggc
ctcgacatcgccacgcccaccgaggccgactcggtcaagctgctcaccgtccaccgctcc
aagggcctcgagtgggcgaccgtgttctgcgtcggcgtctgcgagtcgcggttcccgtca
gcccagggacgcacgctgtgggtgtcctcgcccgccgtgctcccggcggcgctgcgcggc
gacgcggccgacctgccccagctcgagggctacgacaaggcggcgctcgacgactaccgg
cggcggtccaaggcccatgaggccgacgaggagctccggctcggctacgtcgccttcacc
cgcgccgcccaccggctggcggtcagctccttccagtgggggccgcgcaagacgccctac
ggaccgtcggcctaccaagaggcggtgcgcgagatgctcaccgcctgggacctcgccccg
gagccgtggctgacccgccccgacaagggcgccgccaacccctacgacgccgaggacccg
gcccggccctggccggccgacggtgtcggcgacgaggcgcggctgcggctggccgctgcg
gcgctggtgggtgccgccgatcccgacggccccgaccccgagctcgacatcgtcaccgcg
gcgcgggtcgccgagtgggacgccgagatcgagcagctcctcgccgaggcacggctcgcg
tccggtgcgggcggcgaggtcgtcgtgccgatgccggcgtcgttgtccgcgaccgcgctc
agccggctccgggacgacccccaggcgttcgcccgcgagctcgtccgcccgatgccgcgg
cccccggcgccggccgcccggttcggcacccgcttccacgcctgggtcgaggcccgcttc
ggccagcagggactgttcgaccccgacgagctgtccggccgggccgacgccggcatcgac
gacgaggccgacctcaaggagctcgtcgccgccttcgaggagggccccttcggcagccgg
gtgccctacgcggtcgaggcgccgttcgcgctcgtgctcgacgcggccgacgggcggcgc
caggtgatccgcggccggatcgacgcggtctacgccgagcccgacggctcgttcctggtc
gtcgactggaagaccagcgcccgccaggaggccgaccccctccagctcgcggtctaccgg
ctggcctgggccgagctccgggggcttccgccggagcgggtgcgggccggcttctactac
gtgcgccgcggcgagctcgtcgtgcacgacgagctcgccggccgagaggaggtgctgtcc
ctcctggggtga
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