Pimelobacter simplex: KR76_10420
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Entry
KR76_10420 CDS
T03528
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psim
Pimelobacter simplex
Pathway
psim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KR76_10420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psim03021
]
KR76_10420
03019 Messenger RNA biogenesis [BR:
psim03019
]
KR76_10420
Transcription machinery [BR:
psim03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KR76_10420
Messenger RNA biogenesis [BR:
psim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KR76_10420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
ATPase_2
Spore_III_AA
TFIIA
PAT1
AAA_14
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AIY17060
UniProt:
A0A0A1DNV6
LinkDB
All DBs
Position
2147451..2149265
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AA seq
604 aa
AA seq
DB search
MTETPDSTPSAPAAAPEQQAAEKAPQKAAAKAPRKRSGGLNSMLLADLKAMANGMGIAGA
GSMKKAALVDAIKGAQAGGGGGGGGGSSRPAAAEPVAEKQQQPQQPVAEKTAPPQQAEQK
QQPQQAEKQQPQAEKQQGGGKGSGKQQKQKQQNQQQSQKQQAAQKQQQQQAAAAAAREAA
AAASANAEADDADGDDDGDGTEGGSRRNRRRRGRDRDRTTRAGREPDTEVREDDVLVPAA
GILDVLDNYAFVRTSGYLPGTDDVYLSLSMVRKYGLRRGDAITGQVRQPREGERREKFNP
MVRIDTVNGVDPEQVKNRVEFTELTPVSPTERLRLETTSDNLAGRLIDLAAPVGKGQRGL
IVSPARAGKTTLLRQIAAAITANNPECHLMVVLVDERPEEVTDFERSIKGEVIASTFDRP
AADHTTLAELAIERAKRLVELGHDVVVLLDGLTRLGRAYNLAAPASGRILSGGVDASALF
PPKRFFGAARNIENGGSLTVLATAVVDSGSRVDEVIFEELRGTENLELRLRSDLADKREF
PAIDVVASGTRREELLLGKEELEIVWKLRRELADGDRVEAHATLLQRLRNSKSNYEFLLR
VQRD
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaaacccccgactccaccccgtcggcccccgcggccgcgcccgagcagcaggct
gccgagaaggctccgcagaaggctgccgcgaaggcgccgcggaagcgctccggtggactc
aactcgatgctcctggccgacctcaaggcgatggccaacggcatgggcatcgccggtgcc
ggcagcatgaagaaggccgccctggtcgacgccatcaagggcgcgcaggcgggcggtggc
ggtggcggtggtggcggcagcagtcggccggcggcagcggagccggtcgccgagaagcag
cagcagccgcagcagccggtcgccgagaagaccgctccgccgcagcaggccgagcagaag
cagcagccgcagcaggctgagaagcagcagccgcaggccgagaagcagcagggcggcggc
aagggctccggcaagcagcagaagcagaagcagcagaaccagcagcagagccagaagcag
caggccgcccagaagcagcagcagcagcaggccgccgccgccgcagcccgggaggccgcc
gcagccgccagcgcgaacgccgaggccgacgacgccgacggtgacgacgacggcgacggc
accgagggcggcagccgccgcaaccggcgtcgccgcggccgcgaccgcgaccggacgacg
cgcgccggccgcgagcccgacaccgaggtccgcgaggacgacgtcctggtgccggccgcc
ggcatcctcgacgtgctcgacaactacgcgttcgtgcggaccagcggctacctgcccggc
accgacgacgtctacctgtcgctgtcgatggtccgcaagtacggcctgcgccgcggcgac
gcgatcaccggccaggtccgccagccgcgcgagggcgagcggcgcgagaagttcaacccg
atggtccgcatcgacacggtcaacggggtcgacccggagcaggtcaagaaccgggtcgag
ttcaccgagctgacgccggtctcgccgaccgagcggctccggctcgagacgacgtccgac
aacctcgcgggccggctgatcgacctggccgcgcccgtgggcaagggccagcggggcctg
atcgtgtcgccggcgcgggcgggcaagacgacgctgctgcgccagatcgccgcggcgatc
accgcgaacaacccggagtgccacctgatggtggtcctggtcgacgagcgccccgaggag
gtcaccgacttcgagcggtcgatcaagggcgaggtcatcgcgagcaccttcgaccgcccg
gcggccgaccacacgacgctggccgagctcgccatcgagcgcgccaagcgcctggtcgag
ctcgggcacgacgtcgtcgtcctgctcgacggcctgacccgactgggacgcgcctacaac
ctggccgcgccggccagcggccggatcctgtccggcggcgtcgacgcctcggcgctcttc
ccgccgaagcgcttcttcggggctgcccgcaacatcgagaacggcggctcgctcaccgtc
ctcgcgaccgccgtggtcgactccggctcacgcgtcgacgaggtcatcttcgaggagctg
cgcggcaccgagaacctcgagctgcggctgcgctcggacctcgccgacaagcgcgagttc
cccgcgatcgacgtcgtcgcctccggcacccgccgcgaggagctgctgctcggcaaggag
gagctcgagatcgtctggaagctgcgccgcgagctcgcggacggcgaccgggtcgaggcc
cacgcgacgctcctccagcggctgcgcaacagcaagtcgaactacgagttcctcctccgc
gtccagcgcgactga
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integrated database retrieval system
