Pimelobacter simplex: KR76_18355
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Entry
KR76_18355 CDS
T03528
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
psim
Pimelobacter simplex
Pathway
psim03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KR76_18355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psim03400
]
KR76_18355
Enzymes [BR:
psim01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
KR76_18355
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
KR76_18355
DNA repair and recombination proteins [BR:
psim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KR76_18355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF7573
DUF2267
Zn_ribbon_6
Zn_Tnp_IS91
Motif
Other DBs
NCBI-ProteinID:
AIY18245
UniProt:
A0A0A1DS74
LinkDB
All DBs
Position
complement(3724685..3725545)
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AA seq
286 aa
AA seq
DB search
MPELPEVEVVRAGLERHVSGATIAAVDVLHERPVRRHPGGPLGFAAALTGRRIDGARRRG
KYLWLPLDDGNAILGHLGMSGQMLVQPVDTPAERHLRVRFALTGTEHGRELRFVDQRMFG
GLSVSLGGAELPPEIAHIARDPLDPEFDDDAFVARLRKRTSGVKRLLLDQGLISGVGNIY
ADEALWRAGLHGERPGDRLTRGQAVALLGHARDVMTAALAQGGTSFDALYVNVNGESGYF
DRSLHAYGREDEPCDRCGTTIRRVAFMNRSSYFCPRCQPVPRRRRG
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagctccccgaggtcgaggtcgtccgcgccggcctcgagcgccacgtcagtggc
gccacgatcgccgcggtcgacgtcctccacgaacggcccgtgcgccgccaccccggcggc
ccgctcggcttcgccgccgcactgaccggacgccggatcgacggcgcccggcgccgcggc
aagtacctctggcttcccctcgacgacggcaacgcgatcctcgggcacctcgggatgagc
ggccagatgctggtccagccggtcgacacgcccgccgagcggcacctgcgcgtccgcttc
gccctcaccggcaccgagcacgggcgcgagctgcgcttcgtcgaccagcggatgttcggc
ggcctgtccgtctcgctcggcggcgccgagctgccgcccgagatcgcccacatcgcccgc
gacccgctcgacccggagttcgacgacgacgccttcgtcgcccggctccgcaagcgcacg
tcgggcgtcaagcggctgctgctcgaccagggcctcatctccggcgtcggcaacatctac
gccgacgaggcgctctggcgcgcgggcctgcacggcgagcggcccggcgaccggctcacc
cggggccaggctgtcgcgctgctcggccacgctcgcgacgtcatgacggccgcgctcgcc
cagggcgggacgtcgttcgacgcgctctacgtcaacgtcaacggcgagtccggctacttc
gaccgctcgctccacgcctacgggcgcgaggacgagccctgcgaccggtgcgggacgacg
atccgccgggtggcgttcatgaaccgctcgtcgtacttctgcccgcggtgccagccggtg
ccgcggcgccgccgcggctag
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