Pseudorhodoplanes sinuspersici: CAK95_19975
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Entry
CAK95_19975 CDS
T04834
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psin
Pseudorhodoplanes sinuspersici
Pathway
psin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAK95_19975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psin03019
]
CAK95_19975
Enzymes [BR:
psin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CAK95_19975
Messenger RNA biogenesis [BR:
psin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CAK95_19975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_C_2
Utp25_C
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
ARQ01119
UniProt:
A0A1W6ZUK7
LinkDB
All DBs
Position
complement(4125642..4127117)
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AA seq
491 aa
AA seq
DB search
MTAFLDLGLAEPIARALTDERYETPTPIQAQTIPQVLAGRDVVGIAQTGTGKTAAFALPI
LNHLANNRRRPERKTCRVLVLSPTRELSGQIVDSFKTYGRYMKCAVNLAIGGVPIGRQIR
ASANGADVLVATPGRLLDLVQAKAITLDQVEIFVLDEADRMLDMGFINDIRKIVSRLPKE
RQTLFFSATMPPPIEELGRIMLRDPARVAVTPQASTAERVTQSVVLVDKASKPGLLADIL
RNEPIDRAIVFTRTKHGADKVVRQLEQKGLAAEAIHGNKSQNQRERALAAFRNGRIKTLI
ATDIAARGIDVDGITHVINYDLPNMPDSYVHRIGRTARAGADGVAISFCDNDERAYLRDI
ERLIRMKLPSTDKRAGKSTEGRPAEARSTSEPRSVASENHAARPDGKPRNRAGQRRRRRE
REAQGTQDGAPRGPQQTARPQNNGGRGPGQPYTGKPQRNGGTGGGDISSAGFMRGRRSDR
RGQRQNAPAPR
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
ttgactgctttccttgaccttggattggccgagcccatcgcccgtgccttgactgacgaa
cgttacgaaaccccgacccctattcaggcgcaaaccattcctcaggttctggcgggccgc
gatgtcgtcggcattgcgcagaccggcaccggcaagaccgctgccttcgcgctgccgatc
ctcaatcacctcgccaacaaccgccgccgtcccgaacgcaaaacctgtcgtgtgctggtg
ctgagcccgacccgcgaattgtccggtcagatcgtcgacagcttcaagacctatggccgc
tacatgaagtgcgccgttaatctggccattggtggcgttccgatcggtcgccaaatcagg
gcgtctgcgaatggcgccgatgttctggtcgccacgcctggccggctgctggatctcgtc
caggcgaaggcgatcacgctcgatcaggtggaaatcttcgtcctcgacgaagccgaccgc
atgctcgacatgggcttcatcaacgatatccgcaaaatcgtcagccgcctgccgaaagag
cgccagacgctgttcttttcggccaccatgccgccgccgatcgaagaactcggccgcatc
atgctgcgcgatccggcgcgcgtcgcggtaacgccgcaggcatcgaccgccgagcgtgtc
acgcagagtgtcgtgctggtggacaaagccagcaagcccggccttctcgccgatatcttg
cgcaatgagccgatcgaccgcgctatcgtcttcacccgcaccaagcacggtgccgacaag
gtggtgcgtcagctcgagcagaagggcctggccgccgaagcgatccatggcaacaagtcg
cagaaccagcgcgagcgcgccctcgccgccttccgcaacggccgcatcaagacactgatc
gcaaccgacatcgccgcacgcggcatcgatgtcgacggcatcacgcatgtcatcaactat
gacttgccaaacatgccggacagctatgtgcaccgcatcggccggaccgcccgtgccggc
gccgatggtgtcgcgatctcgttctgcgacaatgacgagcgggcctatctgcgtgacatc
gaaagactgatccgcatgaagctgccgtcaacggacaaacgcgccggcaaatcgacagaa
ggcaggccggccgaggcccgttcgacttccgaaccgcgttcggtcgcttcggaaaatcac
gccgcccgccccgacggcaagccgcgcaaccgggccggccagcgccgccgccggagggaa
cgcgaagcgcaagggacacaagacggtgccccgcgagggccgcagcagactgcgaggccg
caaaacaatggcggccgtggccccggccagccatacacaggcaagccgcaacgcaatggc
ggaaccggcggcggtgatatatcgtccgccggcttcatgcggggccgcagatctgatcgc
cgtgggcaacggcagaacgcgcccgccccgcgttga
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