Pediococcus siamensis: ACLJJ6_06820
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Entry
ACLJJ6_06820 CDS
T11433
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psis Pediococcus siamensis
Pathway
psis03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACLJJ6_06820 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psis03021
]
ACLJJ6_06820 (rpoC)
03400 DNA repair and recombination proteins [BR:
psis03400
]
ACLJJ6_06820 (rpoC)
Enzymes [BR:
psis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACLJJ6_06820 (rpoC)
Transcription machinery [BR:
psis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACLJJ6_06820 (rpoC)
DNA repair and recombination proteins [BR:
psis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACLJJ6_06820 (rpoC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XNN30793
LinkDB
All DBs
Position
complement(1393988..1397629)
Genome browser
AA seq
1213 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDYEC
ACGKYKRIRYKGIVCDRCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIDPGKTPLEKKQLLTEREYREKLDEYGNTFNAKIGGEAIKELLQ
DVDLEKEAKTLKEELKDASGQKRTRAVRRLDIIEAFVKSGNEPDWMVMDAIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSLKMNQMGLPVP
MALELFKPFIMKELVARGLASNIKNAKRKIDRKDDDVYDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGKAMRLHPLVCEAYNADFDGDQMAIHLPLSDEAQAEARLLMLAAHHIL
APANGKPVVTPSQDMVIGNYWLTMERADSVGEGMIFKDLDEIRLAMQNGYVSEHTRIGIQ
VSSMPEKPFTTEQRKRILVTTAGKAIFNDILPKGLIYLNEPTNENLVEGTPDKYFLAPGE
DIKAFIKAQPLIPPFKKGFLSDIIAQVYKQYKVTQTSLLLDRMKDLGYDVSTKSGLTVGI
ADITDLKEKPEIVAAAHKQVATVTKQFRRGLITDDERYERVVGIWNDAKDNIQQKLMESF
DPQNPIYMMSDSGARGNISNFTQLAGMRGLMAAPNGKIMELPILSNFREGLSVLEMFIST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREKDCGTDRGLIISAIVEGNEVIESLY
DRVLGRYTQKSVYNPETGEKIVGKNEMIDETIAQKIVDAGVETVTIRSAFTCNTRHGVCE
RCYGRNMATGDRVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGNEDITQGLPRIQEI
VEARNPKGRAEITEVTGTVETVEENPAERTKEVTIKGETDTRTYTLPITARMKVAEGDFI
HRGSALNDGSIDPKELLKVRDVLSTENYLLREIQRVYRMQGVEILDKHIEIMVRQMLRKI
RVMDPGDTDLLPGTLLDINDFKDANYKTLIAGGIPATARPVLLGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMPDYRKIIPKTVGGKVAEPQSL
SDVEKEMDTETTK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtcaataagtttgaaagcatgcaaattggactcgcttcccctgacaagatc
agaagttggtcatatggtgaagttaaaaagccggaaacgattaactaccggacattaaaa
cccgaaaaagacggactgtttgatgaacggattttcggaccaactaaagattatgaatgt
gcttgtggtaagtataagcggattcgttataagggaattgtttgtgaccgatgtggtgta
gaagtcacaaagtcaaaagttcgtcgtgaacggatgggtcacattgaattagctgctcct
gttacacacatttggtacttcaagggtatcccaagtcggatgggcttagttttggatatg
agtccccgcgcactcgaagagatcatttactttgcttcttatgttgtgattgatcctggt
aagacaccgcttgaaaagaaacagctactcacggaacgcgagtatcgtgaaaagttagac
gaatatggaaatacctttaacgccaagatcggtggcgaagcgatcaaagaattgcttcaa
gatgttgatcttgaaaaagaagctaaaactttaaaagaagaattaaaggatgcttctggt
caaaagcggacgcgtgccgttcgtcgtttagatattattgaagcgtttgtcaaatctggc
aacgaacctgattggatggttatggatgcaattccggttattccaccagatttacggcca
atggtgcaattagatggtggccgatttgccacatccgatttgaatgatttataccgacgg
gtaattaatcgtaataaccgtttgaaacgattattagatttgaatgctcctggtatcatt
gttcaaaatgaaaaacggatgttacaagaagccgttgatgctttgattgataatggtcgt
cgtggccgtccggttgcgggtccaggaaatcgtccattgaaatctctttctcacatgttg
aaagggaaacaaggccgtttccgtcaaaacttacttggaaaacgtgttgattattctggc
cgttccgttattgatgtgggtccatctttgaagatgaaccaaatgggattaccagtccca
atggctttggaattattcaaacctttcattatgaaggaattggtggcacgtggcttagct
tcaaatattaagaacgccaaacgtaagatcgaccgtaaagatgatgacgtttatgatgtc
ttagaggatgttatcaaggaacatcccgttcttttaaaccgggcacctactttgcataga
ttaggaattcaagcttttgaacctgttttggttagtgggaaagctatgcgtttgcatccc
ctggtttgtgaagcttacaatgccgattttgatggtgatcaaatggcgattcatttacca
ctttcagatgaagcacaagccgaagcacggctattgatgttagcagcgcatcatattttg
gctcctgctaatgggaaaccagttgtaacaccttcccaagatatggttatcggtaactac
tggttaaccatggaacgtgcagacagtgtcggcgaagggatgattttcaaagacctggat
gaaattcgcttggcaatgcaaaatggttatgtttccgaacatacacgcatcggaattcaa
gtaagttccatgcctgaaaaaccatttacaactgagcagcggaaacgtattttagtgaca
actgccggaaaagcgatctttaacgatatcctccctaaggggctcatttatctaaacgaa
ccaactaacgaaaacttagttgagggcaccccagataaatatttcttggcaccgggtgaa
gatatcaaagccttcattaaggcgcaaccattgattccaccattcaagaaaggcttcttg
agtgatatcattgctcaagtttataagcagtataaagttacccaaacttcgctcctcttg
gatcggatgaaagatttagggtatgacgtttctactaaatctggtttaacggtcggaatt
gctgatattaccgatttgaaggaaaaaccagagattgtggctgctgcacataaacaggta
gcaactgttactaaacaattccgtcgtggtttaatcacggatgacgaacgctatgaacgg
gttgtgggaatctggaacgatgctaaagataacattcagcaaaaattgatggagagtttt
gatccgcaaaacccaatctacatgatgagtgattctggagctcgtggtaatatttctaac
tttacgcagttggccgggatgcgtggcttgatggccgcacctaatggtaaaatcatggaa
ttgcctattctgtcaaacttccgtgaaggactctctgtgttggaaatgttcatttccact
catggtgctcgtaagggaatgactgatacggcgttgaagacggctaactcaggttactta
acccgtcgtttagttgatgtggcccaggatgttatcgtccgtgaaaaagattgtggaact
gatcgtgggttgattatttcagccatcgttgaaggaaacgaagtgatcgaatccttgtac
gatcgtgtcttaggacgttacacacagaaatctgtttataatcctgaaactggcgaaaaa
atcgttggtaagaatgaaatgatcgacgaaacaattgcgcaaaagatcgttgatgctggc
gtcgaaactgtcacaatccgttctgcattcacatgtaacacacgtcatggtgtttgtgaa
cgttgttacggccgtaacatggcaactggtgaccgtgttgaagttggtgaagcagtgggt
accgttgcggctcaatcaatcggtgaaccaggtacgcagttaacaatgcgtaacttccat
actggtggtgttgcgggtaacgaagatatcacacaaggacttcctcgtattcaggaaatt
gtcgaagcacgtaaccctaaaggtcgtgctgaaattactgaagttacaggtacagttgaa
acggttgaggaaaatcctgcggaacggactaaagaagtcaccatcaagggtgaaacagat
accagaacctataccttgccaattacggcacggatgaaggtggctgaaggtgatttcatt
catcgtggttcagctttgaatgatggttcaattgatccaaaggaattgttgaaggttcgt
gatgtcctttcgacagagaattatcttttacgtgaaattcagcgtgtttatcgtatgcaa
ggtgtagaaatcttggataagcacattgagatcatggttcgtcaaatgttgcggaagatt
cgggttatggatcccggcgatactgacttattgccagggacactgttagatattaacgac
tttaaggatgctaactacaagaccttaattgccggtggtattccagcaactgcccgccca
gttctcttgggaatcacaaaggcggctctggaaacaaacagtttcttgtcagctgcttcc
ttccaggaaacaacacgagtcttaaccgatgctgctattcgtggcaagaacgatccactt
gttggtttgaaggaaaatgttattattggtaagattatccctgcaggaacagggatgcct
gattaccgtaagatcattcctaaaacagtcggtggcaaagttgcagaaccacaatcgtta
agcgatgttgaaaaagaaatggataccgaaacaactaagtaa
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