Pediococcus siamensis: ACLJJ6_09885
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Entry
ACLJJ6_09885 CDS
T11433
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
psis Pediococcus siamensis
Brite
KEGG Orthology (KO) [BR:
psis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psis03400
]
ACLJJ6_09885
Enzymes [BR:
psis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACLJJ6_09885
DNA repair and recombination proteins [BR:
psis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
ACLJJ6_09885
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Dsc3_C
SaeA_1st
Motif
Other DBs
NCBI-ProteinID:
XNN31349
UniProt:
A0ACH3Y1L6
LinkDB
All DBs
Position
complement(2056673..2060260)
Genome browser
AA seq
1195 aa
AA seq
DB search
MTVKFILGKASRDSRQTMINEVDRVLQEGTKTRLYYIVPNHIKFQSELTVLNALRARHQG
SATTYAQNQLQVFSFSRLAWYFMKNEPVYQIPRLSKAGVGMLIDRIILEHQDELTVFNGE
QTQTGFIQQLASQFDELQKGRISAEDFEKMTQEINGNEDATIDLTAKMHDLAIIYTAFEE
EMLGNYVDSNTLMRALCEYLAEQDLSQMVFFLDGFSTFSAQEMKLVQVLIKQAKAVIVSL
TLDKPHYDALPETTDLFYEAGKTYFQLYQFAKQNHVPIQTDTFTQQSRVSRDLTQLEDFW
IQSTNMEPTKPETLQDPQNVRILQADSRQTEIEQIARQIRQTVAANPQIHYHDFLILTRH
LDTYETVLDPVLNEYEIPHFNDLQISMKDHPFVALIDALFAVKAHFYRYQDMMQLLKTEL
LIPTIDGQPMAIQDFRQALNLTENLILKNGYEGKKWLQKEDWQYLRFNNSDFGMQTDKDI
AISQQINIIRNYVREILPPFFKALDQAQTGKQAVTLLYQFLIDQGVTQRLKAWRDEAIAA
GDLAKGAQPEQTWQTFCDMLDEYVAILGDREFTVANFTALLDAGFEGATYSLIPSTLDQV
MVSETGMAQMNNRKYTFIIGATDTVMPERFTDQGILTDDDCEKLQPVLNEEQFFSNNVSE
QARFERYLNYVAFLSGCQTICFSFASTDATGGEQKLSPYVEEIQKHFQIEIERYFDRPRV
DEASVQPFLGSKRSTLSHLLQVSRDGKNIQKMVAPEWLYIYQLLKQDAQLAALTSRVFQS
LNYQNVPVKLKPKIVSELYGNTINTSISKLEEFYQNEYAYFLKYGLKLQERDVFELSPAS
TGDYFHMALDQFVKLVNQNHLDMGKLSDQEMTQLLEQVVDQIKTQPQFEILGSSNRMHYI
NHQLNETLKQMLKILMLQSTNSKMRPIKTEVLFGQVGSEVGLHSLDFQVSPNQKVRVRGK
IDRIDELNLTSENGQKRKYFGVVDYKSSAHDFNFRDVYYGLAMQMLTYIDALKQNISLID
QQAKSPRLSGALYVHLQNPTVNVNKLKAMSQENIQKELLKKTKYKGILLSDPDLLENLDV
NLDSGSSLIYPFKKTKAGKYTSYDNRIVTREDLERLIRHAEQKIIAATRRIFAGEVQLNP
ARWPDTHTALQYSPYKAIMQFDEMLPENNYHKLANLSAKEVLELLKEEDNDHEQN
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgacggtaaaatttattctcggcaaagcaagtcgtgattctcggcaaaccatgatcaac
gaggtggatcgggtgcttcaagaagggacgaagacgcggctttactatattgtgcctaat
cacattaagtttcagtccgaattaacggttttaaatgccttgcgagcgcgccatcagggt
tcagcaacgacttatgcccaaaatcaattgcaggtcttttcattttctcgtcttgcctgg
tattttatgaaaaacgaaccggtctatcaaattccacggcttagtaaagcaggagtgggg
atgttaattgatcgcattattttggaacaccaagatgagctgactgtttttaatggtgaa
caaacccaaacgggctttattcagcaactggccagccaatttgatgaacttcaaaaggga
agaatttccgcggaagactttgaaaaaatgactcaagaaattaatggtaatgaggacgca
accattgatttaacagctaaaatgcatgatttggcgatcatttacacagcctttgaagaa
gaaatgctcggaaattatgtagatagtaatacgttgatgcgtgccctttgtgaatattta
gccgaacaggacttaagtcaaatggtcttttttttggacggcttttcaactttttcagct
caagaaatgaagttagttcaagttttaatcaagcaggcaaaagctgtcattgtcagttta
actttggataaaccacattacgatgcgcttccagaaacgactgatctgttttacgaagcc
ggaaaaacatattttcagttgtatcagtttgctaagcaaaatcacgtcccaattcaaaca
gatacgttcacgcagcaatctcgggtatcaagagacttaacgcagctggaggacttttgg
attcagtctactaatatggaacctacaaagccagagactttacaagatccgcaaaatgtt
cgaattttgcaagctgatagccggcagacagaaatcgaacagattgctcggcaaatcaga
caaactgttgcggctaaccctcagattcattatcatgactttttgatcttaacgcgtcat
cttgatacttacgaaacggttttagatccggtattaaatgaatacgagattccgcatttt
aatgacttgcagatttccatgaaggatcatccgtttgtggcgctgatcgatgctttattt
gcagttaaagcacatttttatcgttatcaggatatgatgcaactgctcaaaacagaatta
ctaattcctacaattgatggtcagccaatggccattcaggattttcgacaagctttaaat
ttgaccgaaaatcttattttaaaaaatggttacgaggggaaaaaatggcttcaaaaggag
gactggcaatatctacgctttaataacagcgattttggtatgcaaacagataaggatatt
gcaattagccagcaaatcaatattattcgcaactatgtccgtgaaattctgccgccattt
tttaaagcactagatcaagcccaaacagggaaacaagccgtaactttgctttatcagttt
ttaattgaccagggggtgacacagcgtttgaaggcgtggcgggatgaagccattgctgct
ggtgatcttgccaagggcgctcaaccagaacaaacctggcagacgttctgcgatatgctg
gatgagtacgtcgctatcctgggtgatcgtgaatttacggttgctaattttacggcttta
ctcgatgcaggatttgaaggcgcaacctactctctaattccatccaccttggatcaagtg
atggtttcggaaaccggcatggcccagatgaataatcgcaaatacacctttattattggg
gcaactgatactgttatgccggagcgcttcactgatcaggggattttgaccgatgacgat
tgtgaaaagttgcaacctgtattaaatgaagaacaatttttttctaataatgtcagcgaa
caagcccgctttgagcgttatttaaactatgtagcctttttatcgggatgccaaacgatc
tgtttttcgtttgcaagtactgatgctactggtggagaacaaaagctttccccatacgta
gaagaaattcaaaaacattttcaaattgaaattgaacgttacttcgaccggccacgggtc
gatgaggcatctgtgcaaccatttttgggatcgaaaagaagtaccttaagtcatcttttg
caggttagtcgggacgggaaaaatatccaaaaaatggtggcaccggaatggttgtatatt
tatcagctactcaaacaagatgcacaattggcggcactgaccagccgtgttttccaaagt
ttaaattatcagaatgtgccggttaaattgaaaccgaagattgtcagcgaactgtatgga
aatacaattaatacgtcgatttcaaaactcgaagaattctaccaaaatgaatatgcgtat
ttcctcaagtatgggttaaaattacaagaacgcgatgttttcgagctttcgccagcaagt
acgggtgattacttccatatggcgctggaccaatttgtaaaattagtgaaccaaaaccac
ttagatatggggaaactttcagatcaagaaatgacacaacttttagaacaggttgtggat
caaatcaagacgcaaccgcaatttgaaattttgggcagttcaaatcggatgcactacatt
aatcatcaactcaacgagaccttgaaacaaatgttgaaaattttaatgttacagagtaca
aattctaaaatgcgaccaatcaaaacagaagttctgtttggtcaagtgggatctgaagta
ggtctgcattccctcgactttcaggtttcaccaaatcaaaaagtccgggttcgcggtaaa
atagaccgtatcgatgaacttaatttaacttcagaaaatgggcaaaaacgaaaatatttt
ggggttgtcgattacaagtcgagtgcccatgattttaatttccgggatgtgtattatggc
ctggcaatgcaaatgttgacgtacattgatgcgcttaaacaaaacatttcgctcattgat
cagcaggccaaatcgccacggctgtcgggtgctttgtatgttcatttgcaaaaccccact
gttaatgtcaacaagttgaaagccatgtcacaagaaaacatccaaaaggaactactgaag
aagacgaagtataagggcattctgttaagtgatcctgatcttttggaaaacctggatgtg
aatctcgattcggggagctcactaatttatccgttcaaaaagacaaaggcgggcaaatac
acttcatatgataatcgaattgtcacgcgtgaggatttggaacgactgattagacacgct
gaacaaaagattattgcagctacacggcgaatttttgctggtgaagtccagttaaatcct
gcgcgttggcccgacacccacactgctttgcagtattcgccttacaaggcgattatgcaa
tttgatgagatgctaccggaaaacaattatcataaactagccaatttgagtgcaaaagag
gtattggaattattaaaggaggaggataacgaccatgagcaaaactaa
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integrated database retrieval system
