KEGG   Phocoena sinus (vaquita): 116738815
Entry
116738815         CDS       T07759                                 
Symbol
SS18
Name
(RefSeq) protein SSXT isoform X1
  KO
K15623  protein SSXT
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03082  ATP-dependent chromatin remodeling
psiu05202  Transcriptional misregulation in cancer
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    116738815 (SS18)
 09160 Human Diseases
  09161 Cancer: overview
   05202 Transcriptional misregulation in cancer
    116738815 (SS18)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:psiu03036]
    116738815 (SS18)
Chromosome and associated proteins [BR:psiu03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    116738815 (SS18)
   GBAF(ncBAF) complex
    116738815 (SS18)
SSDB
Motif
Pfam: SSXT
Other DBs
NCBI-GeneID: 116738815
NCBI-ProteinID: XP_032458501
Ensembl: ENSPSNG00000008316
UniProt: A0A8C9BSI7
LinkDB
Position
14:47801900..47878729
AA seq 443 aa
MSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKTSECSQYQQMLHTNLVY
LATIADSNQNMQSLLPAPLLLWSTGSGCAGPAAMAHRPSRSEPPTQNMPMGPGGMNQSGP
PPPPRSHNMPSDGMVAGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSS
SHGSMGGYSHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMNIQPNQGPMMHQQPPSQQY
NMPQGGGQHYQGQQPPMGMMGQVNQSNHMMAQRQIPPYRPPQQGPPQQYSGQEDYYGDQY
SHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDA
YQGPPPQQGYPAQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPAQP
GPPQPPQQRPYGYDQGQYGNYQQ
NT seq 1332 nt   +upstreamnt  +downstreamnt
atgtccgtggcgttcgcggccccgaggcagcgcggcaagggggagatcactcccgctgcg
attcagaagatgttggatgaaaataaccatcttattcagtgtataatggactatcagaat
aaaggaaagacctcagagtgttctcagtatcaacagatgctgcatacaaacttggtctac
cttgctacaatagcagattctaatcaaaacatgcagtctcttttaccagcacccctcctg
ttgtggagcacaggctccggatgcgcaggcccagcggccatggcccacaggcccagccgc
tccgagccacccacacagaatatgcctatgggtcctggagggatgaatcagagcggccct
cccccacctccacgctcacacaacatgccttcagatggaatggtagctgggggtcctcct
gcaccacacatgcagaaccagatgaacggccagatgcctgggcctaaccatatgcctatg
cagggacctggacccaatcaactcaatatgacaaacagttccatgaatatgccttcaagt
agccacgggtccatgggaggttacagccattccgtgccatcgtcccagagcatgccggta
cagaaccagatgaccatgagtcaagggcagccaatgggaaactatggccccagaccaaat
atgaatattcaaccaaaccaaggtccaatgatgcaccagcagcctccttctcaacagtac
aatatgccgcagggaggtgggcagcattaccaaggccagcagccacctatgggaatgatg
ggtcaagttaaccagagcaatcatatgatggcacagagacagattcctccctatagacca
ccacaacagggcccaccacagcagtactcaggccaggaagactattatggggaccagtac
agtcatggtggacaaggtcctccagaaggcatgaaccagcaatattaccctgatggtcat
aatgattacggttatcagcaaccgtcgtatcctgaacaaggctacgataggccttatgag
gattcctcacaacattactacgaaggagggaattcacagtatggccaacagcaagatgct
taccaaggaccacctccccaacagggatatccagcccagcagcagcagtacccagggcag
cagggctacccaggacagcagcagggctacggtccttcgcagggtggtccaggtcctcag
taccctaactacccacaggggcaagggcagcagtatggaggttacagaccagcccagcct
gggccaccccagcccccgcagcagaggccttacgggtatgaccagggacagtatggaaat
taccagcagtga

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