KEGG   Phocoena sinus (vaquita): 116738849
Entry
116738849         CDS       T07759                                 
Symbol
SF3A1
Name
(RefSeq) splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116738849 (SF3A1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:psiu03041]
    116738849 (SF3A1)
Spliceosome [BR:psiu03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    116738849 (SF3A1)
 Complex B
    116738849 (SF3A1)
 Complex C
   U2 SnRNP specific factors
    116738849 (SF3A1)
SSDB
Motif
Pfam: Surp PRP21_like_P ubiquitin Ubiquitin_2 Rad60-SLD
Other DBs
NCBI-GeneID: 116738849
NCBI-ProteinID: XP_032458604
Ensembl: ENSPSNG00000007269
UniProt: A0A8C9BJH3
LinkDB
Position
14:66550826..66571053
AA seq 793 aa
MPAGPVQAVPPPPPAATEPKQPTEEEASSKEDSTPSKPVVGIIYPPPEVRNIVDKTASFV
ARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQ
QQATQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQ
FLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFTKLKKEAENPREVL
DQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTT
PEELGARILIQERYEKFGESEEVEMEVESDEEDEKQEKAEEPPSQLDQDTQVQDMDEGSD
DEEEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKI
PASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVE
ETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDD
TKEKIGPSKPNEIPQQPPPPSSATNIPSSAPPITSVPRPPAMPPPVRTTVVSAVPVMPRP
PMASVVRLPPGSVIAPMPPIIHAPRINVVPMPPSAPPIMAPRPPPMIVPTAFVPAPPVAP
VPAPAPMPPVHPPPPMEDEPASKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEW
KLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAI
IHLALKERGGRKK
NT seq 2382 nt   +upstreamnt  +downstreamnt
atgccggccggacccgtgcaggcggtgcccccgccgccgcccgcggccaccgagcccaaa
cagcccacagaagaggaagcatcttcaaaggaggattctactccttccaagccagtggtg
ggtattatttaccctcctccagaggtcaggaatatcgttgacaagactgccagcttcgtg
gccagaaacggacctgaatttgaagctaggatacgacagaacgagatcaacaaccccaag
ttcaacttcctgaaccccaatgacccttaccatgcctactaccgccacaaggtcagcgag
ttcaaggaggggaaagcccaggagccttcggctgccatccccaaggtcatgcagcagcag
cagcaagccacccagcagcagctgccccagaaggttcaagcccaagtgatccaagaaacc
atcgtgcccaaagagccccctcccgagttcgagttcattgcagaccccccctctatctca
gccttcgacctggacgtggtgaagctgacggctcagtttgtggccaggaatgggcgccag
tttctgacccagctgatgcagaaagagcagcgcaactaccagtttgacttccttcgcccg
caacacagccttttcaactacttcacgaagctggtggaacagtataccaagatcttgatt
ccacccaaaggcttatttaccaaactcaagaaagaggcagagaacccccgggaagttttg
gaccaggtatgttaccgggtggagtgggccaagtttcaggagcgtgagaggaagaaggaa
gaggaggagaaggaaaaggaacgggtggcctatgctcagattgactggcatgattttgtg
gtggtggaaacagtggacttccagcccaatgagcaagggaacttccctccccccaccacc
ccagaggagctgggggcccgaatcctcattcaggagcgctacgagaagtttggggagagt
gaggaggtcgagatggaggtcgagtctgatgaggaggacgagaaacaggagaaggcggag
gagcctccgtcccagctggaccaggacacccaagtgcaagacatggatgagggttcagat
gatgaagaagaagggcagaaagtgcccccacctccagagacacccatgccaccgcctctg
cccccaactccagaccaggtcattgtccggaaggactatgacccaaaagcttccaagccc
ctgcctccagcccctgctccagatgaatatctcgtgtcccccatcactggggagaagatc
cctgccagcaaaatgcaggaacacatgcgcattgggcttcttgacccccgttggctggag
cagcgagaccgctccattcgtgagaagcagagtgatgatgaggtgtacgcaccaggtctg
gatattgagagcagcttgaaacagctggctgagcggcgtaccgacatctttggtgtagag
gaaacggccattggtaagaagattggcgaggaggagatccagaagccagaggaaaaggtg
acctgggatggccattccggcagcatggcccggacccagcaggctgcccaggccaatatc
accctccaggagcagatcgaggccatccacaaggctaagggcttggtgccagaagatgat
accaaagagaagattggccccagcaagcccaatgaaatcccccagcagccaccacctccg
tcttcagccaccaacatccccagctcagccccacccattacctcggtgcctcggccaccc
gcgatgccacctcctgtccgtaccacagttgtgtctgcagtacccgtcatgccccggccc
ccgatggcatcagtggtccgactgcctcctggttcggtgatcgcccccatgccaccgatc
atccatgcgcccaggatcaacgtggtgcccatgcctccctcggcccctcctatcatggca
ccccgcccaccacccatgattgtgccgacagctttcgtgcccgcaccacctgtggcaccc
gtcccagctccagctcctatgccgcctgtccacccaccacctcccatggaagatgagcct
gcctccaagaaactgaagaccgaggacagcctcatgccagaagaggagtttctacgcaga
aacaagggtccagtgtccatcaaagtccaggtgcccaacatgcaggataagacggaatgg
aagctgaacggacaggtgctggtcttcaccctcccactcacagaccaggtctctgtcatc
aaggtgaagattcacgaagccacgggcatgccggcagggaaacagaagctgcagtatgag
ggtattttcatcaaggattccaactcgctggcttactataacatggctaatggtgccatc
atccacctggcgctcaaggagagaggcgggaggaagaagtag

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