Phocoena sinus (vaquita): 116739060
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Entry
116739060 CDS
T07759
Symbol
POLE
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A isoform X1
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03030
DNA replication
psiu03410
Base excision repair
psiu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116739060 (POLE)
03410 Base excision repair
116739060 (POLE)
03420 Nucleotide excision repair
116739060 (POLE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psiu03032
]
116739060 (POLE)
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116739060 (POLE)
Enzymes [BR:
psiu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
116739060 (POLE)
DNA replication proteins [BR:
psiu03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
116739060 (POLE)
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
116739060 (POLE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
APP_N
Tudor_3
GARP
Motif
Other DBs
NCBI-GeneID:
116739060
NCBI-ProteinID:
XP_032459025
Ensembl:
ENSPSNG00000015590
UniProt:
A0A8C9E6H7
LinkDB
All DBs
Position
14:complement(89289868..89345987)
Genome browser
AA seq
2279 aa
AA seq
DB search
MVLRNSGRRRAEPGLDGEASRDDGPSTSVSALKRLERSQWTDKMDLRFGFERLKEPGEKT
GWLINMHPTEILDEDKRLVSAVDYYFIQDDGSRFKVALPYKPYFYIATRKGCEREVSSFL
SKKFQGKIAKVETVPKEDLDLPNHLVGLKRNYIKLSFNTVEDLVKVRKEISPAVKKNREQ
GHTSDAYTAMLTSVLQGGSVITDEEEASKKISDQLDNIVDMREYDVPYHIRLSIDLKIHV
AHWYNVQYRGSAFPVEIARRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMI
DGQGYLITNREIVSEDIEDFEFTPKPEYEGPFYVFNAPDEVHLIQRWFEHIRETKPNIMV
TYNGDFFDWPFVEARAAVHGLSMYQEVGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVG
SHNLKAAAKAKLGYDPVELDPEDMCRMATEQPQTLATYSVSDAVATYYLYMKYVHPFIFA
LCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEPEFSKLTDDGHVLDAETYV
GGHVEALESGVFRSDIPCRFRMNPAAFDFLLQRVEKTMRHAIEEEEKVPMEQVTNFQEVC
DQIKAKLTSLKDVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPG
ANCQRKMAWQWRGEFMPASRSEYHRIQHQLESEKFPPLTPEGPARAFHELSREEQAKYEK
RRLADYCRKAYKKIHVTKVEERLTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWRKKLS
AAVEVGEAAEAKRCRNMEVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTGA
NIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVIKTTSVKKPKVTISYPGAMLNIM
VKEGFTNEQYQELAEPSSLTYVSRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFN
EDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGSTLEEAYGSVAKVADYWLDVLYSK
AANMPDSELFELISENRSMSRKLEDYGEQKSTSISTARRLAEFLGDQMVKDAGLSCRYII
SRKPEGSPVTERAIPLAIFQAEPTVRKHFLRKWLKSSSLQDFDIRTILDWDYYIERLGSA
IQKIITIPAALQQVKNPVPRVKHPDWLHKKLLEKNDVYKQKKISELFVLEGKRQVGVAQA
SEGAQSLGAPDMEDFGLVKPLHSAVPIATKRRRSHWESQEESQDLELTVPWQEILGQPPG
LGSTQEEWLVWLQFHKKKWQLQARQRLAHKKRRRLAGPEGAPRPGTVREGPSTGLGGFLR
RTARSILDLPWQIVQISATGQAGLFRLWAVISSDLYCIKLNIPRIFYVNQRVAKAEEGPS
YRKVNRVLPRSNMVYNLYEYSVPEDMYQEHINEINTELAAPDIEGVYETQVPLLFRALVQ
LGCVCVVNKQLVRHHSGWEAETFALEHLEMRSLAQFSYLEPGSIRHIYLYHHAQGHKALF
GIFVPAQRKASVFVLDTVRSNQMPSLSALYSAEHSLLLEKVGPELLPPSKHTFEVRAETD
LKVICRAIQRFLLAYKEERRGPTLVAVQSNWELKRLAGEVPVLEEFPLVPVRVADKVSYG
VLDWQRHGARRMIRHYLNLDTCLSQAFEMSRYFHVPVGNLPEDISTFGSDLFFARHLQRH
NHLLWLSSTSRPDLGGKEADDNRLVVEFDDQAPVEVNSSGCYSTVCVELDIQNLAVNTIL
QSHHVNDMEGANSMGISFDVIQQASLEDMITGNQAASAPTSYDETALCSSTFRILKSMVV
GWVKEIMQYRNIYADNQVVHFYRWLRSPSSLLHDPALHRTLHSMMKKLFLQLIAEFKRLG
SSVVYANFNRIILCTKKRRVEDALAYVEYITNSIHSKEIFHSLTISFSRCWEFLLWMDPS
NYGGIKGNVPSSIHCGQQDSPEEGRAEGEEPEEEPEEGGAQELDVEDLLENSWNILQFLP
QAASCQSYFLMIVSAYIVAVYHSMKEELRRSAPGSTPVRRRGASQLSQEAQGEAGALPGM
ITFSQDYVANELTQNFFTITQKIQKKVTGSRNSTELSEMFPVLPGSHLLLNNPALEFIKY
VCKVLSLDTNITNQVNKLNRDLLRLVDVGEFSEEAQFRDPCRSYVLPEVICRSCNFCRDL
DLCKEPSFSQDGSVLPQWLCSNCQVAYDSSVIEMALVETLQKKLMAFTLQDLICLKCRGV
KETNMAMYCSCAGAFSLTIHTKVFMEQIRTFQNIAQHYGMSYLMETLEWLLQQNPQLGH
NT seq
6840 nt
NT seq
+upstream
nt +downstream
nt
atggttctgaggaacagcgggcggcggcgcgcagagccgggcttggacggcgaggccagc
cgggacgatggcccctctacctctgtctcggcactcaagcgcctggagcgcagtcagtgg
acagataagatggatctgcggtttggttttgagagactcaaggagcctggtgagaagaca
ggctggcttatcaacatgcaccctacggagattttagatgaagataaacgcttagttagt
gcagtggattactactttattcaagatgatgggagcagatttaaggtggccttgccctat
aagccatatttctacattgcaaccagaaagggttgtgagcgagaagtttcgtcttttctc
tctaagaagtttcagggtaaaattgctaaagtagagactgttcctaaagaggatctggac
ttgccaaatcacttggttggtttgaaacgaaattacattaagctgtccttcaacaccgtg
gaggaccttgtcaaagtgaggaaggagatctcccctgctgtgaagaaaaaccgggaacag
ggccacaccagtgatgcctatacggctatgctcaccagtgttctacaagggggcagtgtg
attactgatgaagaggaagcctctaagaagatttctgaccaattggacaacattgtggac
atgcgagagtacgatgtgccctaccacatccgcctctccattgacctgaagatccatgtg
gctcactggtacaacgtccagtaccgaggaagtgcctttccagtggaaattgcccgccgc
gatgatcttgttgaacgacccgaccctgtggttttagcatttgacattgagacgaccaaa
ctgcccctcaagtttcccgatgctgagactgatcagattatgatgatttcctacatgatt
gatggccagggctacctcatcaccaacagggagatcgtctcagaagatatagaagatttc
gagttcacccccaagccagaatatgaagggcccttctatgtcttcaatgcgcctgacgag
gttcatctaatccaaagatggttcgaacacatccgggagaccaaacccaacatcatggtc
acctataatggggactttttcgactggccgtttgtggaggccagagcagcggtccatgga
ctgagcatgtaccaggaggttgggttccagaaggacagccagggggagtacaaagcaccc
cagtgcatccacatggactgtctcaggtgggtgaagagggacagttaccttcccgtgggc
agccacaacctcaaagcagctgccaaagccaagctgggctatgaccccgtggaactggac
cccgaggacatgtgccggatggccactgagcagccccagacgctggccacctactcagtg
tcagacgcagtggccacatactacctgtacatgaagtacgtccacccctttatattcgcc
ctgtgcaccattatccccatggagcccgatgaggtgctgcggaagggctccgggacgctg
tgtgaggccttgctgatggtacaggccttccacgccaacatcgtcttccccaacaagcag
gagccagagttcagcaagctgacagatgatggccacgtgctggatgccgagacctacgtg
ggtggccacgtggaagccctggagtcgggcgtgttccgcagcgatatcccctgccggttc
cggatgaatcctgctgcctttgacttcctgctgcagcgggtggagaagaccatgcgtcac
gccatcgaggaagaggagaaggtgcccatggagcaggtcaccaacttccaagaggtgtgt
gatcagattaaggccaagctcacctccctgaaagatgttcctaaccgaattgagtgtccc
cttatctaccacctggacgtgggggccatgtaccccaacatcatcttgacgaaccgcctg
cagccctctgccatggtggatgaggccacctgtgctgcctgtgacttcaacaagcctgga
gcaaactgccagaggaagatggcctggcagtggaggggcgagttcatgccagccagtcgc
agtgagtaccatcggatccagcaccagctggagtcagagaagttccctcccttgacccca
gagggcccagcccgggcctttcacgagctgtcccgcgaggagcaggctaaatacgagaag
cggaggctggcagattactgccggaaggcatacaagaaaatccacgtgaccaaggtggaa
gaacgtcttaccaccatctgccagcgggagaactccttctatgtggacacagtgcgtgcc
tttcgggacaggcgctacgagttcaaaggtctccacaaggtgtggagaaagaagctatct
gcggcggtggaggtgggagaggcagcggaagcaaagcgctgcaggaacatggaggtcctg
tacgactccctgcagctggctcacaagtgcatcctcaactccttctacggctacgtcatg
cgcaagggggcccgctggtactccatggagatggctggcatcgtctgcttcacgggggcc
aacattatcacccaggcacgggagctgattgagcagatcgggaggcccttagagctggac
acagatggaatatggtgtgtcctgcccaacagcttcccggaaaactttgtcatcaagacg
accagtgtgaaaaagcccaaggtgaccatctcctaccctggggctatgttaaacatcatg
gtcaaggagggcttcaccaatgagcagtaccaggagctggctgagccttcctcgctcacc
tatgtctcccgctcagagaacagcatcttttttgaggttgacggaccctaccttgccatg
atccttccagcctccaaggaagaaggcaagaaactgaagaagaggtatgccgtattcaat
gaggatggttccctggctgagctcaagggcttcgaggtcaaacgccgtggggagctgcag
ctgattaaaatcttccagtcctcagtattcgaggccttccttaagggcagcaccctagag
gaggcgtatggctctgttgccaaggtggctgattactggctggacgtgctgtacagtaag
gcagctaacatgcctgattctgagctgttcgagctgatctctgagaaccgttccatgtct
cggaagctggaagattatggggagcagaagtctacgtccatcagcacggccaggcgcctg
gctgagttcctgggggatcagatggtgaaggatgcagggctgagctgccgctacatcatc
tcccggaaacctgaggggtctccggtcacagagagggccattccactcgccattttccag
gcagagcccacggtgaggaagcactttctccggaaatggcttaagagttcttcccttcaa
gactttgatattcggacaattctggactgggactactacatcgagcgactgggaagtgcc
atacagaagatcatcacaatccctgcggctctgcagcaggtgaagaacccagtaccacgt
gtcaagcaccctgactggctgcacaaaaaactgctggagaagaacgatgtctacaagcag
aagaagatcagtgagctcttcgtccttgagggcaagagacaggtgggcgtggcacaagct
tcagaaggtgcccagagccttggcgcccccgacatggaggacttcggccttgtgaagccg
ctccactcggcagtgcccattgctaccaagaggaggcgtagccactgggagagccaggag
gagtcgcaggacctggagctgacggtgccctggcaggagatcttggggcagcctccgggg
cttggatccacccaggaagagtggctggtctggctccagttccacaagaagaagtggcag
ctacaagctcgacagcgccttgctcacaagaagaggcggcgtctggcggggccagaaggt
gcaccgaggcctgggaccgtccgagaggggccctccacagggctggggggcttcttgcga
agaactgctcgcagcattctggacctcccgtggcagatcgtgcaaatcagcgcgaccggc
caggctggcttgttcaggctgtgggctgtcatcagcagtgacctgtattgcatcaagctg
aacattccccggatattctacgtgaaccagcgggtggccaaagcggaggagggcccttcc
tatcggaaggtgaatcgggtccttcctcgctccaacatggtctacaatctctatgagtac
tcggtgccagaggacatgtaccaagagcacatcaacgagatcaacactgagctggcggcg
ccggacattgagggcgtgtacgagactcaggttccgttattgtttcgggccctggtgcag
ctgggctgtgtgtgtgtggtcaataaacagttggtgaggcatcactcaggctgggaagca
gaaaccttcgctcttgagcacctggagatgcgctctctggcccagttcagctacctggaa
ccagggagcatccgccacatctacctgtatcaccacgcgcagggccacaaagctctcttc
ggcatcttcgtgcccgcacagcgcaaggcgtctgtgtttgtgttggataccgtgcgaagc
aaccagatgcccagcctcagtgccctgtactcagctgagcacagccttctgctggaaaaa
gtgggccctgagctcctgccccccagcaaacacacttttgaagttcgggctgaaacagac
ttgaaggtcatctgcagagccatccagcgcttcctgctggcctacaaagaggagcgccgt
gggcccacactcgtcgctgttcagtccaactgggagctgaagaggctggctggcgaagtg
cccgtcttggaggagttcccgctagtgcctgtccgtgtggctgataaggtcagctacggg
gtcctggattggcagcgccacggagcccggcgcatgatccggcactacctcaacctggac
acttgtctgtcacaggccttcgagatgagcaggtacttccacgtccccgttgggaatctg
ccagaggacatctctacgtttggctccgacctcttctttgcccgccatctccagcgccac
aaccacctcctctggctgtcttccacatcacggcctgacctgggcgggaaggaggctgac
gacaaccgcctcgtcgtggagttcgatgaccaagcccctgtggaggtcaacagttcaggc
tgttattccacagtgtgcgtggagctggacattcagaacctggctgtcaacaccatcctg
caatctcaccacgtcaatgacatggagggggccaacagcatgggcatcagcttcgatgtg
atccagcaggcctccctggaggacatgatcacgggcaatcaggctgccagcgctcccacc
agctacgacgagacggccctctgctccagcaccttcaggatcctgaagagcatggtggtg
ggctgggtgaaggagatcatgcagtaccgcaacatctacgcagacaaccaggtggtgcac
ttctaccgctggctccggtccccgtcctcgctgctccacgaccccgccctgcatcgcacg
ctgcacagcatgatgaagaagctcttcctgcagctcattgctgagttcaagcgcctgggg
tcgtcagtcgtgtatgccaacttcaaccgcatcatcctgtgcaccaagaagcggcgggtg
gaggacgcccttgcctacgtggagtacatcaccaacagcatccattctaaagagatcttc
cattctttgacaatttctttctctcgatgctgggaatttcttctctggatggatccctct
aactatggtggaatcaaaggaaatgttccatctagtattcactgtggacagcaagactcc
cccgaagagggcagagcagagggggaggagcctgaggaggagcctgaggagggaggtgca
caggagctggatgtcgaggacctgctggaaaacagctggaatatcctgcagttcctgccg
caggcagcctcctgccagagctacttcctcatgatcgtttcagcatacatcgtggccgtg
taccacagcatgaaggaggagctgaggcgcagcgccccgggcagcacccctgtgaggagg
aggggggccagccagctctcccaggaggcccagggagaggccggagcccttccgggaatg
atcaccttctcacaagattacgtggcgaacgaactcactcagaacttcttcaccatcaca
cagaagattcagaagaaagtcacaggctctcggaactcgactgagctctcagaaatgttt
cctgtcctccccggttctcacctgctcctcaataaccccgctctggagttcatcaaatat
gtgtgcaaggtcctgtctctggacacgaacatcacaaaccaggtgaacaagctaaaccga
gacctgcttcgcctggtagatgtcggcgagttctcagaggaggcccagttccgagacccc
tgccgctcctacgtgctccctgaggtcatctgccgcagctgtaacttctgccgggacctg
gacctgtgcaaagagccctccttctctcaggatgggtctgtgctgcctcagtggctctgc
tccaactgtcaggtagcctacgactcgtcagtcatcgagatggccctggtggaaaccctg
cagaagaaactgatggccttcaccctgcaggacctgatctgcctgaagtgccggggtgtg
aaggagaccaacatggccatgtactgtagctgtgccggggccttctccctcaccatccac
accaaggtcttcatggagcagatcagaaccttccagaacattgcccagcactatggcatg
tcgtacctcatggagaccctggagtggctgctgcagcagaacccccagctgggacattag
DBGET
integrated database retrieval system
