Phocoena sinus (vaquita): 116739097
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Entry
116739097 CDS
T07759
Symbol
LHX5
Name
(RefSeq) LIM/homeobox protein Lhx5
KO
K18493
LIM homeobox protein 5
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
116739097 (LHX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psiu03000
]
116739097 (LHX5)
Transcription factors [BR:
psiu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain LIM
116739097 (LHX5)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LIM
Homeodomain
Homeobox_KN
Herpes_UL87
Motif
Other DBs
NCBI-GeneID:
116739097
NCBI-ProteinID:
XP_032459101
Ensembl:
ENSPSNG00000010348
UniProt:
A0A8C9E283
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Position
14:complement(74888090..74897148)
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AA seq
402 aa
AA seq
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MMVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRF
GTKCAGCAQGISPSDLVRKARSKVFHLTCFTCMVCNKQLSTGEELYVIDENKFVCKDDYL
SSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKR
RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ
LSALGARRHAFFRSPRRMRPLGGRLDESEMLGSTPYTYYGDYQGDYYAPGGNYDFFAHGP
PSQAQSPADSSFLAASGPGSTPLGALEPPLAGPHAADNPRFTDMISHPDTPSPEPGLPGA
LHPMPGEVFSGGPSPPFPMSGTSGYSGPLSHPNPELNEAAVW
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgatggtgcactgtgctggttgcgagcggcccatcctcgaccgctttttgctgaacgtg
ctggaccgcgcgtggcacatcaaatgcgttcagtgctgcgagtgtaagaccaacctctcg
gagaagtgcttctcgcgcgagggcaagctctactgcaaaaatgacttcttcaggcgcttc
ggcactaagtgtgcaggctgcgcgcaaggcatctcgcccagtgacctggtgcgtaaggcc
cgcagcaaagtcttccacctcacctgcttcacctgcatggtctgcaacaagcagctgtcc
acgggcgaggagctctacgtcatcgacgagaacaagttcgtgtgcaaggacgactacctg
agctcgtccagcctcaaggagggtagcctcaactcagtgtcgtcctgtacagaccgcagc
ttgtccccggacctccaggacccactccaggacgatcccaaggagacggacaactcgacg
tcgtcggacaaggagacggccaacaacgagaacgaggagcagaactcgggcacgaaacgg
cgcggcccgcgcaccaccatcaaagccaagcagctggagacgctcaaggccgccttcgcc
gccacgcccaagcccacgcgccacatccgcgagcagctggcgcaggagaccggcctcaac
atgcgcgtcatccaggtgtggttccagaaccgacggtccaaagaacgccggatgaaacag
ctgagcgccctgggcgcccggagacacgccttcttccggagtccgaggcgcatgcgcccg
ttgggcggccgcttggacgagtctgagatgttggggtccactccgtacacctactacgga
gactaccagggcgattactacgcgccgggaggcaactacgacttcttcgcgcacggcccg
ccgtcgcaggcgcagtccccggccgactcgagcttcctggccgcctcggggcccggctcg
acgccgctgggcgcgctggagccgccgctcgccggcccgcacgccgccgacaaccccagg
ttcaccgacatgatctcgcacccggacacgccgagccccgagccgggcctgccgggcgcg
ctgcaccccatgcccggcgaggtgttcagcggcggccccagcccacccttccccatgagc
ggcaccagcggctacagcggacccctgtcgcaccccaaccccgagctcaacgaggccgcc
gtgtggtaa
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