Phocoena sinus (vaquita): 116739521
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Entry
116739521 CDS
T07759
Symbol
TRIM56
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psiu04121
]
116739521 (TRIM56)
Enzymes [BR:
psiu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116739521 (TRIM56)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116739521 (TRIM56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-C3HC4_4
zf-RING_5
ANCHR-like_BBOX
RING_XB3-XBAT31
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
116739521
NCBI-ProteinID:
XP_032459731
Ensembl:
ENSPSNG00000007555
UniProt:
A0A8C9BH74
LinkDB
All DBs
Position
15:complement(81002744..81011451)
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AA seq
755 aa
AA seq
DB search
MVSQGSSPSLLEALSSDFLACKICLEQLRVPKTLPCLHTYCQDCLAQLAEGSHLRCPECR
ETVPVPPTGVAAFKTNFFVNGLLDLVKARAGGDLRAGKPACALCPLMGGASAGGPATARC
LDCADDLCQACADGHRCTRQTHSHRVVDLVGYRAGWYDEEARERQAAQCPQHPGESLRFL
CQPCSQLLCRECRLDPHLDHPCLPLAEAVRARRPGLEGLLAGVDSNLAELEATRLAEEEA
LACLREQAAKVGTQVEEAAEGVLRALLAQKQEVLGQLRAHVEAAEEAARERLGELESRAQ
VAREAAAFARRVLSLGREAEILSLEGAIAQRLQQLQRCPWTPEPAPCLLPRLELHPGLLD
KNRQLLRLSFQEQQPQKDSGKDGARSQGGAATPPQSRDGAQTPKQDSAQPPQEDGAQTLK
AERAETPQEDGAQTPKEGRAQTPQEDGGAQSPRGGRSNKKRKFKGRLKSVSREPSPAPGP
NLEGSGLLPRPIFFCSFPTRMPGDKRSPRITGLCPFGSREILVADEQNRALKRFSLNGDY
KGAVPVPEGCSPCSVATLQDAVAFSAGARLYLIRPNGEVQWRRALSLCQASHAVAAMPSG
DRVAVSVSGHVEVYNMEGSLATRFIPGGKASRGLRALVFLTASPQGNFVGSDWQQSSLVV
CDGLGQVIGEYRGPGLHGCQPGSVSVDKKGYIFLTLREVNKVVILDPKGSLLGDFLTAYH
GLEKPRVTTMVDGRYLVVSLSNGTIHVFRVRPPDS
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggtttcccagggctcctcgccctccctgctggaggccctgagcagcgacttcctagcc
tgtaaaatctgcctggagcagctgcgggtgcccaaaacgttgccctgcctgcatacctac
tgccaggactgcctggcccagttggccgagggcagccacctccgatgccctgagtgccgc
gagactgtgcctgtgccgcccacgggcgtggctgccttcaagaccaacttctttgtcaac
gggctcctggatttggtgaaggcccgagccggtggagacctgcgcgcagggaagccggcc
tgtgcactgtgcccgctgatggggggcgccagcgccggggggccagccacagcccggtgc
ctggactgcgccgacgacttgtgccaggcctgtgccgatgggcaccgctgcactcggcag
acccacagccaccgagtggtggacctggtgggctacagggcagggtggtacgacgaggag
gcccgggagcgccaggcggcccagtgtccccagcacccgggggagtccctgcgcttcctt
tgccagccctgctcccagctgctgtgccgggagtgtcgcctggacccccacctggaccac
ccctgcctgcccctggctgaggctgtgcgtgcccggaggccaggcctcgaggggctactg
gcgggcgtggacagcaacctggccgagctggaggccacccggctggcggaagaggaagcc
ttggcctgtctgcgggagcaggcagccaaggtgggcacgcaggtggaagaggcagccgag
ggggtcctccgggccctcctggcccagaagcaggaggtgctggggcagctacgggcccac
gtggaggctgccgaggaggctgcacgggagaggctgggggagctggagagccgggctcag
gtggccagggaggcggccgcctttgcccgtcgcgtgctcagcctgggtcgggaggccgag
atactctcgctggagggggcgattgcccaaaggcttcagcagctgcagcgttgtccctgg
acgcctgagccagccccctgcctgctgccccggctggagctccatcctggactcctggac
aagaaccgccagctgctaaggctctcctttcaggagcagcagccccagaaggacagcggg
aaagacggagccagaagccagggaggcgctgcaacccccccccagagcagggacggagcc
cagaccccaaagcaggacagcgcgcagccgccccaggaagatggagcccagaccctaaag
gcggagagagccgagacgccccaagaagatggagcccagaccccgaaagagggcagagcc
cagacaccccaggaagatggaggagcccagtccccaaggggcggccgatccaacaagaag
aggaagttcaaaggcaggctcaagtccgtttcccgggagcccagcccggcacctgggccg
aacctggagggctctggcctcctccccaggcccatctttttctgcagcttccccacacgg
atgccgggggacaagcggtctccgcggatcaccgggctgtgtccctttggctcccgggag
atcctggtggcagacgagcagaacagggccctgaagcgcttctccctcaatggcgactac
aagggcgcggtgcccgtccccgagggctgctccccgtgcagcgtggccaccctgcaggac
gccgtggccttctcggctggcgctcggctctatctcatccgccccaatggcgaggtgcag
tggcgccgggcgctgagcctctgccaggccagccacgccgtggccgccatgccgagcggg
gaccgggtggccgtcagcgtgtcaggccatgtggaggtgtacaacatggaaggcagcctg
gccacccggtttatccctgggggcaaggccagccggggcctgcgggcactggtgttcctg
accgccagcccccagggcaacttcgtggggtcggattggcagcagagcagcttggtggtc
tgtgacgggctgggccaggtgattggggagtaccgggggccgggcctgcacggctgccag
ccaggctctgtgtccgtggataagaagggctacatctttctgacccttcgggaggtcaac
aaggtggtgatcctcgatcccaaggggtcgctgctcggtgacttcctgacggcctatcac
ggcctggaaaagccccgggtgaccaccatggtggatggcaggtacctggttgtgtccctc
agtaatgggaccatccatgtctttcgggtccgccctcctgacagttaa
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