Phocoena sinus (vaquita): 116739602
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Entry
116739602 CDS
T07759
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04612
Antigen processing and presentation
psiu05145
Toxoplasmosis
psiu05152
Tuberculosis
psiu05164
Influenza A
psiu05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
116739602 (CIITA)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
116739602 (CIITA)
09171 Infectious disease: bacterial
05152 Tuberculosis
116739602 (CIITA)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
116739602 (CIITA)
09163 Immune disease
05340 Primary immunodeficiency
116739602 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
psiu01001
]
116739602 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
psiu04054
]
116739602 (CIITA)
Enzymes [BR:
psiu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
116739602 (CIITA)
Protein kinases [BR:
psiu01001
]
Serine/threonine kinases: Other
TAF1 family
116739602 (CIITA)
Pattern recognition receptors [BR:
psiu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
116739602 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
LRR_14
nSTAND_NTPase5
LRR_9
Motif
Other DBs
NCBI-GeneID:
116739602
NCBI-ProteinID:
XP_032459931
Ensembl:
ENSPSNG00000012771
LinkDB
All DBs
Position
15:58663369..58711302
Genome browser
AA seq
1206 aa
AA seq
DB search
MNHFQTILSQVRMLLSSHRPSQVQALLDNLLAEDLLSREYHYALLHEPDGEALARKISLT
LMEKGDPDLAPLGWIWSGLQAPAAERDSGYKDPGGSGQHTTMELGPLEGGYLELLNSNAD
PLHLYHLYDRMDLAGEEELELCSEPDTDTINCEQFSRLLCDMEGDEETREAYANIAELDQ
YVFQDSQLEGLSKDIFIEHIGLEEMISESVEVLEEAGQKSQKRPFPEELPVDLKHRKLAE
PLAMPVVTGAFLVGLVSDSSAQPCPSPPALFNKEPASSQTQLKDTVPPSSSLLSCLSLPA
GPIQIIPTLSTLPQGLWQISGAGTGISSILIYQSEMPQAHQTPASSSTAVHSLPKSPDRP
GSTSPFAPSAADLPSMPEPALTSRTNLTEDEMSTTQCPAAHEASSKLPKWPESVEQFYCS
LRNKYQAKPAGPEGILVEVDLVRVRLERSGGKSQDRELTTLDWAERQPARGSLGKVLLAS
SNHRRPRETQVIAVLGKAGQGKSHWVRAVSWAWACGQLPQYDFIFCIPCHCLDRPGDTYR
LQDLLFSLGSQPLSVDDEVFSYILRRPDRILLILDAFEELEAQDGFLHSTGGPMSAEARS
LRGLLAGLFQRKLLSGCTLLLTARPRGRLAQSLSKADALFEVAGFSAQQAETYVMRYFEC
SGTTEHQKRALALLQSQPFLLSHSHSPTVCRAVCQLLEALLELGDEAQLPSTLTGLYVGL
LGPGARDSPPGALVGLARLAWELGRGHQSSLREGQFPSTEVRVWAVAQGLVQPTPGAPET
KLAFSSFLLQCFLGAVWLALSSEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLVGLVFQ
PRACCLGALAGLAGSTSADRKQKVLTRYLKRLQPGTLKAGRLLELLHCAHEALDAGLWQH
VLQGLPAHLSFLGTRLTPPDTHVLGSALEAAGRDFSLDLRSTGVDPSGLGSLVGLSCVTH
FRAALSDTVELWESLQQHGEAKLLRAVKEKFTIEPFKAESVKDVEDLGNLVQIQRTRSSS
EDTPGELPAIRDLKKLEFALGPILGPQAFPKLVKILEAFSSLQHLDLDSLSENKIGDEGV
AQLSATFPQLKALETLNLSQNNITDLGACKLAEALPLLAASLLRLSLYNNCICDVGAESL
AHVLPDMVSLRVLDVQYNKFTAAGAQQLTASLRKCPHVEKLAMWTPTIPFGVQEHLQQLD
SRIILR
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgaatcacttccagaccatcctgagtcaggtccggatgctgctctccagccatcggccg
agccaagtgcaggcgcttctggacaacctgctggcagaggatcttctctccagggagtac
cactacgccctgctccatgagcctgatggtgaggctctggccaggaagatctccttgacc
ctgatggagaaaggagacccagacttggcccccttggggtggatctggagtgggctgcag
gccccggcagccgagagggactccggctacaaggaccctgggggcagtggacagcacaca
accatggagttggggcctctagaaggtgggtacctggagcttctcaacagcaatgctgac
cctttgcatctctaccacctctatgaccggatggacctggctggagaagaagagctagag
ctctgctcagaacctgatacggacaccatcaactgcgaacagttcagcaggctgttgtgt
gatatggaaggtgatgaagagaccagggaggcttatgccaatatcgcggaactggaccag
tatgtcttccaggattcccagctggagggcctgagcaaagacattttcatcgagcacata
ggactggaagaaatgatcagcgagagtgtggaggtgctggaggaagcaggacagaaaagt
cagaaaagacccttcccagaggagctgcctgtggatctgaagcacaggaagctagctgag
cccctagccatgcccgtggtgactggtgctttcctggtggggctagtgagtgactcctca
gctcagccctgcccgtcaccacctgctctgttcaacaaggagccagcatccagccagacc
cagctgaaggacaccgtgcccccttccagttccttgttgagctgcctgagtctccctgct
ggacccatccagatcatccccactctctccactctgccccaggggctctggcaaatctca
ggggctgggacagggatctccagtatactcatctaccaaagtgagatgccccaggcccac
caaacacccgcctccagcagcacagctgtccacagcctcccgaagtccccagaccggccc
ggctccaccagcccctttgccccatcggcagctgacctccccagcatgcctgaaccagcc
ctgacctcccgtacaaacctaacagaggatgagatgtccaccacccaatgcccagcagct
cacgaggcatccagcaagcttcccaagtggcctgagagtgtggaacaattctactgctcg
ctacggaacaagtaccaggctaagcctgcaggcccggaaggcatcctggtggaggtggac
ctggtgagggtaaggctggagaggagcggcggcaaaagccaggacagagagctgaccacc
ctggactgggcagagcggcagccggcccgaggaagtctgggcaaggtgctgctggcctct
agcaaccaccggcggccacgtgagacgcaggtgatcgccgtgctgggcaaagcaggacag
gggaagagtcactgggtccgggccgtgagctgggcctgggcctgcggccagctgccacag
tacgactttatcttctgcatcccctgccactgtttggaccgtccgggggacacctaccgc
ctgcaggatctgctcttctccctgggttcacagccactgtcagtggacgacgaggtcttc
agttacatcttgaggaggcccgaccgcattctgctcatcctggatgccttcgaggagctc
gaagcccaagacggcttcctgcacagcacgggcggacccatgtcagcagaagcccgctcc
ctccgggggctgctggcaggcctcttccagcgcaagctgctgagcggctgcaccctgctg
cttacagcccggccccggggccgcctggcccagagcctgagcaaggccgacgctctgttc
gaagtggccggcttctccgcccagcaggccgagacctatgtgatgcgctactttgagtgt
tcggggaccaccgagcaccaaaagagagccctggcgctcctccagtcccagccatttctt
ctgagtcacagccatagccccactgtgtgccgggccgtgtgccagctcttggaggccctc
ctggagctaggtgatgaggcccagctgccttccacgctcacgggcctctatgttggctta
ctaggcccaggagcccgtgacagccccccaggggccctggtgggactggccaggctggcc
tgggagctgggccgcggtcaccagagcagcctgcgggagggccagttcccatcgaccgag
gtgagggtctgggctgtggcccaaggcttggtgcagcccaccccgggggccccggagacc
aagctggccttctccagcttcctcctgcaatgcttcctgggggccgtgtggctggctctg
agcagcgaaatcaaggacaaggagctgccgcagtatttggcattgaccccgaggaagaag
aggccctatgacaactggctggagggcgtgccgcgctttctggtcgggctggtcttccag
cctcgtgcctgctgcctgggagccctggcagggctggcgggctccacctcagcggacagg
aagcagaaggtgctcaccaggtacctgaagcggctgcagcctgggacgctgaaggcgggg
cggctgctggagctgctgcactgcgcccacgaggcgctggatgctgggctttggcagcat
gtgctgcaggggctcccggcccacctctcgttcctgggcacccggctcacacctcccgac
acccacgtgctgggcagcgccttggaggcggcgggccgagacttctccctggacctccgc
agcactggcgttgacccctctggactggggagcctcgtgggactcagctgtgtcacccat
ttcagggctgccttgagtgacacagtggagctgtgggagtccctacagcagcatggggag
gccaagttactccgagcagtgaaggagaagttcaccattgagcctttcaaggctgaatcc
gtgaaggatgtggaagacctgggcaacctcgtgcagatccagaggacaagaagttcctct
gaagacacgcctggggaactccctgccatccgagacttaaagaagctggagtttgcgctg
ggccccatcttgggccctcaggcttttcccaaactggtgaagatccttgaggccttttct
tcccttcagcatctggacctggactcgctgagtgagaacaagatcggggatgagggtgtt
gcccagctctcggccaccttccctcagctgaaggccctggagacgctcaatttgtcccag
aacaatatcactgacttgggtgcctgcaagctggcggaggccctgcccttgctggctgcg
tccctcctcaggctgagcttgtacaataactgcatctgcgatgtgggagctgagagcctg
gcacacgtgcttccagacatggtgtccctccgggtgctggatgtccagtacaacaagttc
acagctgccggggcccagcagctcactgccagcctgagaaagtgccctcacgtggagaag
ctggcgatgtggacgcccaccatcccttttggcgtccaggaacacctgcagcagctggac
tcaaggatcatcctgagatga
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integrated database retrieval system
