Phocoena sinus (vaquita): 116739700
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Entry
116739700 CDS
T07759
Symbol
GSPT1
Name
(RefSeq) eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1
KO
K03267
peptide chain release factor subunit 3
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116739700 (GSPT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116739700 (GSPT1)
03012 Translation factors [BR:
psiu03012
]
116739700 (GSPT1)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116739700 (GSPT1)
Translation factors [BR:
psiu03012
]
Eukaryotic type
Release factors
116739700 (GSPT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
PAM2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
116739700
NCBI-ProteinID:
XP_032460184
Ensembl:
ENSPSNG00000015046
UniProt:
A0A8C9CGM3
LinkDB
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Position
15:complement(59588748..59622298)
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AA seq
639 aa
AA seq
DB search
MDPGSGGGGGGGGGGGGGSSSSSDSAPDCWDQADMEAPGPGSCGGAGGPLAAAAEAQREH
LSAAFSRQLNVNAKPFVPNVHAAEFVPSFLRGPAQSPAPSPGVAANNHGAGSGAGGPSAP
VEPSQEEQSLLCEGSNSAVSMELSEAVVENGETEMSPEESWEHKEEISEAEPGGGSLGDG
RPTEESAQEMMEEEEEIPKPKSVVAPPGAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGM
VDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAP
GHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLIN
KMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYI
GLPFIPYLDNLPNFSRSVDGPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHN
VEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVII
EHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTA
GTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggatcctggcagtggtggcggcggtggtggcggtggcggcggcggcggtgggagcagc
agcagcagcgactcagcaccggactgctgggaccaggcagacatggaagcccccgggcca
ggctcgtgcggcggcgccggcggtcccttggcggcggcggccgaggcccagcgtgagcac
ctcagcgcggccttcagccggcaactcaacgtcaacgccaagcccttcgtgcccaacgtc
cacgccgccgagttcgtgccgtccttcctgcggggcccggcccagtcgccggcaccctca
cctggcgtcgccgccaacaaccacggagccggcagcggcgcgggaggcccttcggcacct
gtggaaccttctcaagaggaacagtcattgttgtgtgaaggttcaaattcagctgttagc
atggaactttcagaagctgttgtagaaaacggggagacagaaatgtccccagaagaatca
tgggagcacaaagaagaaataagtgaagcagagccagggggtggttctttgggagatgga
aggcccacagaggaaagtgcccaggaaatgatggaggaggaagaggaaataccaaaacct
aaatctgtggttgcaccaccaggtgctcctaagaaagaacacgtaaatgtagtattcatt
gggcatgtagatgctggcaagtcaaccattggaggacaaataatgtatttgactggaatg
gttgacaagaggacacttgagaaatatgaaagagaagctaaagaaaaaaacagagaaact
tggtacttatcttgggccttagacacaaatcaggaagaacgagacaagggtaaaacagta
gaagtgggtcgtgcctattttgaaacggaaaagaagcattttacaattctagatgcccct
ggccacaagagttttgtcccaaatatgattggtggtgcttctcaagcagatttggctgta
ctggtaatctctgccaggaaaggagagttcgaaactggatttgaaaaaggaggacagacg
agagaacatgcaatgttggcaaagacagcaggtgtaaaacacttaattgtgcttattaat
aagatggatgatccaacagtaaattggagcaatgagagatatgaagaatgtaaagagaaa
ctagtgccgtttttgaaaaaagttggcttcaatcccaaaaaggacattcacttcatgccc
tgctcaggactgactggagcaaatcttaaagagcaatcagatttctgtccttggtacatt
ggattaccatttattccatatctggataatttgccaaacttcagtagatcagttgatgga
ccaatcaggctgccaattgtggataagtacaaggatatgggcactgtggtcctgggaaag
ctagaatcaggatctatttgtaaaggtcagcagcttgttatgatgccaaacaagcacaac
gtggaagttcttggaatcctttctgatgatgtagaaactgattctgtagccccaggtgaa
aacctcaaaatcagactgaaaggaattgaagaggaggagattcttccagggttcatactt
tgtgatcctaataatctttgtcattctggtcgcacatttgatgcccagatagtgattata
gagcacaaatccatcatctgcccaggttataatgcggtgctgcatatccatacctgtatt
gaagaagtcgaaataacagccttaatctgcttggtagacaaaaaatcaggagaaaaaagt
aagactcgaccccgctttgtgaaacaagatcaagtatgcattgcccgcttgagaacagca
ggaaccatctgccttgagacctttaaagacttccctcagatgggtcgttttactttaaga
gatgagggtaagaccattgcaattggaaaagttctgaaactggttccagagaaagactaa
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