KEGG   Phocoena sinus (vaquita): 116739739
Entry
116739739         CDS       T07759                                 
Symbol
POLR2J
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB11-a isoform X1
  KO
K03008  DNA-directed RNA polymerase II subunit RPB11
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03020  RNA polymerase
psiu03420  Nucleotide excision repair
psiu05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    116739739 (POLR2J)
  09124 Replication and repair
   03420 Nucleotide excision repair
    116739739 (POLR2J)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    116739739 (POLR2J)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psiu03021]
    116739739 (POLR2J)
   03400 DNA repair and recombination proteins [BR:psiu03400]
    116739739 (POLR2J)
Transcription machinery [BR:psiu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     116739739 (POLR2J)
DNA repair and recombination proteins [BR:psiu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      116739739 (POLR2J)
SSDB
Motif
Pfam: RNA_pol_L_2 RNA_pol_L
Other DBs
NCBI-GeneID: 116739739
NCBI-ProteinID: XP_032460291
Ensembl: ENSPSNG00000006323
LinkDB
Position
15:79986205..79990259
AA seq 135 aa
MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVRSWACRRGWGQSG
RQPVWSQLQRVHAHT
NT seq 408 nt   +upstreamnt  +downstreamnt
atgaacgcgcctcccgccttcgagtcgttcttgctcttcgagggcgagaagaagatcacc
attaacaaggacaccaaggtacccaatgcctgtttgttcaccatcaacaaggaagaccat
acgctaggaaacatcattaaatcgcagctgctgaaggacccacaggtgctgtttgctggc
tacaaagtcccccaccccttggaacacaagatcatcatccgcgtgcagaccacaccagac
tacagcccccaggaggccttcaccaatgccatcacagacctcatcagcgagctctccctg
ctggaagagcgattccgggtgaggagctgggcgtgccggaggggctggggtcagtctgga
cgccagcccgtatggtcacagctgcagcgtgttcatgcccacacctag

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