Phocoena sinus (vaquita): 116739993
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Entry
116739993 CDS
T07759
Symbol
CHD6
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 6
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psiu03036
]
116739993 (CHD6)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
116739993 (CHD6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
MUN
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
116739993
NCBI-ProteinID:
XP_032460928
Ensembl:
ENSPSNG00000022231
LinkDB
All DBs
Position
15:18487167..18700992
Genome browser
AA seq
2720 aa
AA seq
DB search
MIMKIQKKEKQLSNLKVLNHSPMSDASVNFDYKSPSPFDHSTDQEDKTEDVARPCLPQKD
LHTAGEDAETLFPRKTTSHNGTEDSGGGGTGVKKKRKKKDPGEQEGAAKGSKDREPKPKR
KREPREPKEPRKAKEPRKAKEPKEPKQKDGAKKVRKPREASGPKEAKEKRSGPDSAARTK
SKKASKEQGPTPVEKKKKGKRKSETTVESLELDQGLPNPSLRSPEESTESADSQKRRSGR
QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILAS
KTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKH
IFTEPDEDLFNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVDP
AKVKEFESLQVLPEVKHVERPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRK
NCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYH
GSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEA
HRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG
DLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFS
FLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQ
AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQA
AIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK
AVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDLLRKGA
YGALMDEEDEGSKFCEEDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDP
NFWQKWAKIAELDTEAKSEKESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPT
RSRRLNDKTRRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDMEMICRALLVY
CVKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSGLSAPVPRGRKGKKTKNQLLLPELKN
ADWLATCNPEVVLHDDGYKKHLKQHCNKVLLRVRMLYYLKSXNTGRKQRISIXRTPAREL
DVPLPDIDCVEIPVDWWDAEADKSLLIGVFKHGYERYNAMRADPALCFLEKVGMPDEKSL
SAEQGVTDGTSDIPERGNTDKEDNTEDKVDGLQKQMESSSDGGDGIFGEKKDDSRAAQDG
SDPDKSPWPVSSALTARLRRLVTIYQRCNRKELCRPEILGPGNQGYWVQEEMFRRSSEMD
LINKEAQKRWTRREQADFYRTVSSFGVVYDQEKKTFDWTQFRIISRLDKKSDESLEHYFH
SFVAMCRHVCRLPAWKDGGPPDPSICVEPITEERAARTLYRIELLRKVREQVLQCPQLHE
RLQLCRPSLSLPVWWECGKHDRDLLVGTAKHGLNRTDYYIMTDPQLSFLDAYRNYAQHKR
TDPQAPGSLCCLYQTNSKLYESLAYTQMSRTSESLENEPENLVKIEGRDDHLGPPRGSLS
DMTCENFISKVQDVISITHDESLLPESLESMMYGKKALSQEPVSFQESPGTNTKSRQDAV
ALATSRDGSFQPGGHEAEIASGPSFMDTLEAGVAQMNIKNGKHLLVSLSQEGELCCSEAG
QRPESLGQLETKCIASPSLDQGNESGFVDMCNLSVYDSKRNLSSDQQLIDLLECKSLESK
LILGQNHSDEEDEEEENEEENLDLAAGTRERPEVSPLTEPTARMAGEKSRSGFLVDEAKK
GSLAARSQHPGPQGAFLPAACQCHCKHMERWTHGLENDQFEVEKPQGYNPDPYKSKANNV
TMGGELTAVPPELFQVKHELLKEPWKESAEGKQGFPTYLEGSELKAEDVDFESKDDYDRD
GNCQSQDYPGKYSEEESKNSTSGIVGDLRDNLQEARAPTIAQLLQEKTLYSFSEWPKDRV
IINRLDNICHVVLKGKWPSNQQYEPSAALPTPVLTSGAGPRSSLSEPEASEHVFSSGAAL
VAQMQKESFLASVFTKEEQKHRRPYEFEVERDAKTRGLEQFPATHGHPPIVLNGWHGESA
IDLSCPSEGSPGATSPFPVSASTPKIGAIGSLQGALGMDLSGILQAGLIHPVTGQIVNGS
LRRDDAATRRRRGRRKHVDGGVDLIFLKEPTLQAGILEVHEDPGPAPLSTSHPSEGPVPA
TSTPEPAPVAGSQPEKAIPSKSLLDWLRQQADCPLEVPGFGANFSDKPKQRRPRCKDTGK
LDINSLSGEERVPAVPKEPGLRGFLPENKFNHTLPEPVLRDSGPRRRGRRPRSELLKAPA
LVADSPSGMGPLFMNGLIAGMDLVGLQNMRNMPSIPLTGLVGFPASFAAMPTGEEVKSTL
SMLPMVLPGMAAVPQMFGVGGLLNAPMTTTCASAVPAPLSSTTKSGTSAAEKTAEDQPSG
RDVKTDTSAEDKPGPSPFSNQAEPPITTSSPVAFNPFLIPGVSPGLIYPSMFVSPGMGMA
LPAMQQARHSEIVGLESQKRMRKKTKGDNPDPSPEPAPGLEREPGGAQSCPESRAPAPPE
RGHVAQAGEGGPQDSNSVTN
NT seq
8163 nt
NT seq
+upstream
nt +downstream
nt
atgataatgaaaatacagaagaaagagaagcagttgtcaaatttaaaagttctgaatcac
tccccaatgtctgatgcctccgtcaattttgactacaaatccccctccccgtttgaccac
agcactgatcaggaggacaaaactgaagatgttgcccgtccctgtctgccccagaaggac
ctgcacactgctggagaggatgctgagacccttttccccaggaaaacgacatcccataac
gggacggaggacagtggaggaggcggcactggcgtgaagaagaaacggaagaaaaaggat
ccaggagagcaagaaggggcagcaaagggaagcaaggacagggagcccaagccaaagagg
aagcgtgaacctagagagccaaaggagcccaggaaggccaaggagcccaggaaggccaag
gagcccaaggagcccaagcagaaggacggggccaagaaggtgcggaagccccgggaggcc
tcgggccccaaggaggccaaagagaagaggagcggccctgactctgcagccaggacgaag
tccaagaaggccagcaaggagcaaggaccaaccccagtggagaaaaagaagaaaggaaaa
aggaaaagtgaaaccacagtggagagtttagagctggatcagggcctgccgaacccatcc
ctgcggagtcccgaggagtccactgagtctgcagacagccagaaacgacgctcaggacgg
caagtgaagcgcagaaaatacaacgaggacctggacttcaaagtggtggatgatgatggg
gaaaccatcgctgtccttggagccggccggacatctgccctctcagcttctacactggct
tggcaggcggaggagcctccagaagatgacgcaaacatcattgagaagatcctggcatct
aagactgtccaggaggttcacccgggagaacccccattcgacttggaactgttctacgtc
aagtacaggaatttctcctacttacactgtaaatgggccacaatggaagaactcgaaaag
gatcctcgcatcgcacagaagatcaagcgatttaggaataaacaagcccagatgaagcac
atttttactgagcctgacgaagacttgttcaatccagactacgtggaggttgatcgcatc
ttggaggtggcccacaccaaggatgcagaaaccggagaggaagtgacgcattacctggtg
aagtggtgctcactgccttacgaagaaagtacatgggaactggaggaagatgtggatcct
gcgaaagttaaagaattcgaatctctgcaagttctccctgaagttaagcatgtggagcga
cctgcctcagactcctggcagaaacttgagaagtctcgagagtataagaacagtaaccag
ctccgggagtaccagctggaggggatgaactggcttctttttaactggtataacagaaaa
aactgcattttggccgatgagatgggcctagggaaaaccatccagtccatcacattcctt
tcagaaatattcctcaggggaatccacggccctttcctcatcattgccccgctctccacc
atcactaactgggagcgggagttccggacgtggacagagatgaatgccatcgtgtaccac
ggcagccagatcagcaggcagatgattcagcagtatgagatggtgtaccgagatgcacag
ggaaacccgctgtcaggagtcttcaagttccatgtcgtcattacaacgtttgagatgatc
ctggcagactgcccagagctgaagaagattcactggagctgtgtgatcattgatgaagcc
cacagattgaagaataggaactgcaaacttctggagggcctgaagctcatggccctggaa
cacaaggtactgctcacagggacgcccttgcagaactcggtggaggagctcttcagtctg
ctcaacttcctggagccgtcacagtttccttcagagactgctttcttggaggagtttgga
gatctgaaaacagaggagcaggtgaagaaactgcagtctatcctcaaaccaatgatgctt
cggcggctgaaagatgacgtggaaaagaaccttgctcccaaacaagagacaatcatcgaa
gtagagctgaccaatatccagaagaagtactaccgcgccatcctggagaagaacttttcc
ttcctgaccaagggggccaatcagcacaacatgcccaatctcatcaacaccatgatggag
ctgaggaagtgctgtaaccacccctacctgatcaacggggcagaggagaaaattctggag
gacttccggaaaacccacagccctgatgcccccgactttcagctgcaggccatgattcag
gcagcagggaagctggtgctgatcgataaactgctccctaagctgattgctggcggccac
aaagtactcatcttctcccagatggtgcgctgtctcgacatcctggaagattatctcatc
cagagaagatacacctatgagcgaattgatgggcgagtacggggaaacctgcgccaggca
gccatcgaccggttctgtaagccagactcagaccgctttgtctttcttctgtgcacccga
gcgggaggcctggggatcaatctcacagctgccgatacctgcatcatatttgattcagac
tggaacccacaaaatgacttgcaggctcaggcccgatgtcaccggataggccagagtaaa
gccgtgaaggtgtatcgcctcattacacggaactcctacgagcgggaaatgtttgacaag
gccagcctgaagctgggtctggacaaagctgtccttcaggacatcaaccgaaagggcagc
acgaatggagtacagcagctttcaaaaatggaggtagaggacttgctccggaaaggtgct
tatggtgccttaatggatgaggaagacgaaggctccaagttctgtgaagaagacatagac
cagattctgcagaggagaacccacaccatcaccatccagtctgaagggaaaggatccact
tttgccaaggctagctttgtggcttcaggaaacagaacggatatttccttagatgaccca
aacttttggcagaaatgggctaaaatagctgaactggacactgaagcaaagagtgagaag
gaaagcttagtgattgaccgcccacgcgtgaggaagcagaccaaacactacaactctttt
gaggaggatgagctcatggagttttcagagttggacagtgactctgatgagaggcccacg
aggtccaggcgcctcaatgacaaaaccagacgctacctccgagccgagtgcttccgggtg
gagaagaacctgctcatctttggctggggccggtggaaggacattctgacccatggacga
ttcaagtggcatctgaacgagaaggacatggagatgatttgccgggccctgctggtgtac
tgtgtcaagcactacaagggggacgagaagatcaagagtttcatttgggaactgatcacg
cctaccaaagatgggcaggcccagaccctccagaaccactcagggttgtccgctccagtc
cccagagggaggaaggggaagaaaacgaagaaccagctgctgctcccagagttaaagaac
gcagactggctggccacctgcaaccccgaggtggtcttgcacgatgatggctacaagaag
cacctcaaacagcactgcaacaaggtactattgcgagtccggatgctgtactacctaaaa
agctgaaatactgggagaaagcagcggataagcatttgaagaactccggccagggagctg
gacgtgcctctgcccgacatcgactgcgtggagatcccagtggattggtgggatgccgag
gccgacaagtcacttctgattggcgtgttcaaacatggttacgagaggtacaatgccatg
agagcagacccagcactttgcttcctggagaaggttgggatgccagacgagaagtccctt
tctgcagagcagggtgttacagatggaacctcagacattcccgaaagaggcaacacagat
aaagaagacaatacggaagacaaagtagatggcctccagaaacaaatggagagttccagt
gatggaggtgatggcatttttggtgaaaagaaggatgacagccgggcagcccaggatggc
tccgacccagacaaatcaccctggccagtttcgtctgcactcacagctcgtctccgacgc
ctggtcaccatttaccagcgctgtaaccgcaaggagctctgccgacctgaaatcctggga
ccaggaaaccagggatactgggtccaggaagagatgttccggaggtcctcagagatggat
ctcatcaacaaggaagcccaaaagaggtggactaggagagagcaagccgacttctacaga
acagtgtcttcctttggtgtcgtttatgatcaagaaaagaaaacctttgactggacgcag
tttcgcatcatttcccgtttggacaagaagtcggacgagagcctggagcactatttccat
agcttcgtggccatgtgccgccacgtctgtcgtctgccagcctggaaggatggtggcccc
ccagatcccagcatctgcgttgaacccatcactgaagagcgggccgcgagaaccctgtac
cgcattgaactgttgcggaaggtccgggagcaagtgctgcagtgtcctcagctgcacgag
cgccttcagctctgcaggcccagcctctccctccccgtctggtgggagtgtggaaagcac
gatcgggacctgttggtcggcactgccaagcacgggctgaaccgcaccgactactacatc
atgaccgacccccagctgtccttcctggacgcctacagaaactatgcccaacacaaaaga
accgacccccaggctccagggagtctctgttgcctttaccagaccaactccaaactgtat
gagtctcttgcatacactcagatgagcaggacttccgagtcccttgaaaatgaacctgag
aatctagtgaaaatagaaggtagggatgatcatcttggtccacctcggggcagcttatct
gacatgacttgtgaaaactttatttctaaagtgcaggatgtcatttccatcacgcatgat
gagagtctgctgcctgagtccttggagagcatgatgtatggtaagaaagcactaagccag
gagccagtctcttttcaggagagcccaggtaccaataccaagtccagacaagatgccgtg
gctctcgcaacaagcagagatggcagcttccagcctggtggccacgaggcagaaatagcc
tcaggcccctcttttatggatacattagaagcaggagtagctcaaatgaacattaaaaat
ggaaaacatttgctggtgtctctttcacaggaaggggaactctgctgcagcgaggcaggg
cagagacctgaaagccttgggcagctggaaaccaaatgcatagcctccccttccttggac
caaggaaatgagagcgggtttgttgacatgtgcaatctgagtgtctatgactccaaaaga
aacctgtcatcagatcagcagttaattgatttattagaatgcaaaagtttagaaagtaaa
ttgattttgggtcagaaccacagtgatgaggaggacgaagaggaggaaaatgaggaggaa
aacctagacctggccgcaggcacgcgggaaaggccagaggtgtcgcctcttaccgagccc
actgctcgtatggcaggggagaagagccgcagcggctttcttgtggacgaagccaagaaa
ggaagcctggcggccagaagccagcatcctggaccgcagggcgcttttcttcccgcagcc
tgtcagtgtcactgcaaacacatggagaggtggacgcacggcctcgagaatgaccagttt
gaagtggagaaaccccagggttacaacccagacccgtacaaaagcaaagccaataatgtc
acaatggggggcgagctcactgctgttccgccagagctgtttcaggtgaagcatgaactt
ttgaaagaaccctggaaagaaagtgcagaagggaaacaaggtttccctacatatctggaa
gggagtgaactcaaggcagaagacgtggattttgagagtaaagatgattatgatagagac
gggaactgccagagtcaagattatccagggaaatactctgaggaggagagcaagaactcg
acctcgggcatcgtaggggacctcagggacaacctgcaggaggcacgggctcccaccatt
gcacagctgctccaggagaaaaccctctattccttctccgagtggccaaaggatcgcgtg
ataattaaccgcctggataacatctgccatgtggtgttaaaggggaagtggccctccaac
cagcagtatgagccctcggccgcgctgcccacccccgtgttaaccagcggcgctggtccc
cgcagcagcctttcagagccagaggcatcagaacatgtcttcagcagtggcgcagcgttg
gtggcccagatgcagaaggagagcttcttggcttcggtattcacaaaggaggaacagaag
cacaggcgtccttatgagttcgaggtggagagggacgcaaagacccggggcctggagcag
ttccccgccacccacgggcacccccctatcgtcctcaacggctggcatggagagtcagcg
atagacctctcctgcccatcggaggggtccccgggggccacatcccctttcccagtgagc
gccagcacccctaagattggggctatcggttcacttcaaggagcccttggcatggacttg
tctgggattctgcaagccggcctgatccatccagtgactggacagatcgtcaacggaagc
ctcaggagagatgacgctgccaccaggaggcggagagggaggcggaagcatgtagacgga
ggcgtggacctcatctttctgaaggagccgacactccaggcggggatcttggaggtccac
gaagacccagggccggcccccctgagcacctcacacccttctgaagggccagtgcctgcc
acttcgaccccggagccggccccggtagccggcagccagcccgagaaagccattcccagc
aagagcctgctggactggctgcggcagcaggcagactgccccctcgaggtccctggcttt
ggcgcgaatttttcagacaaacccaagcagaggaggccacgctgtaaggatactggaaaa
ttagacatcaactccctgagtggggaagagagggttcctgccgtccccaaggagccaggc
ctgagggggtttctcccggaaaacaagttcaatcacacccttcctgagcctgttctccga
gactcaggcccccgccggaggggcaggcggccccggagcgagctcctgaaggctcccgcc
ctcgtggcggactccccctccgggatggggcctctcttcatgaacggcctgatcgccggg
atggacctggtcggacttcagaacatgagaaacatgcccagcatccccctcacggggctg
gtggggttcccggccagctttgcagcaatgcccacgggcgaagaggtcaagagcacgttg
agcatgctgcccatggtgctgccggggatggccgccgtgccccagatgtttggggtcggg
gggctcctcaatgcccccatgaccaccacctgcgcctcggctgtgccagcgcctttgtca
agcacaacgaagagtggcacgtcggcggctgaaaagactgcagaagaccagcccagcggc
cgtgatgtcaaaacggacacgtcagccgaagacaagcccggtcctagtccattttccaat
caggccgaacctccaataactacgagtagtcctgtggcttttaacccgtttctcatccca
ggagtgtcccccggactcatttacccatccatgtttgtctcccccggcatgggcatggct
ctgccggccatgcagcaggccagacactcagaaatagtaggtctggagagccagaagagg
atgaggaagaaaacaaaaggggacaacccggaccccagcccagagcctgcacccgggttg
gagagggagccgggcggtgcccagagctgccccgaatccagggcccccgcgcctccagag
agaggacacgtagcacaggccggcgaagggggcccccaagactctaacagtgtcaccaat
tag
DBGET
integrated database retrieval system
