Phocoena sinus (vaquita): 116740091
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Entry
116740091 CDS
T07759
Symbol
TOP1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA topoisomerase 1
KO
K03163
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psiu03032
]
116740091 (TOP1)
Enzymes [BR:
psiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
116740091 (TOP1)
DNA replication proteins [BR:
psiu03032
]
Eukaryotic type
DNA Topoisomerases
116740091 (TOP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Topoisom_I_N
Topo_C_assoc
Motif
Other DBs
NCBI-GeneID:
116740091
NCBI-ProteinID:
XP_032461188
Ensembl:
ENSPSNG00000004649
LinkDB
All DBs
Position
15:complement(18947302..19033328)
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AA seq
778 aa
AA seq
DB search
MSGDHLHNDSQIEADFRLNDSHKHKDKHKDREHRHKEHKKDKEKDREKSKHSNSEHKDSE
KKHKEKEKTKHKDGSSEKHKDKHKDRDKEKRKEEKIRASGDVKIKKEKENGFSSPPLIKD
EPEDDGYFAPPREDIKPLKRPRDEDDADYKPKKIKTEDTKKEKKRKLEEEEDGKLKKPKN
KDKDKDKKVPEPDSKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPE
NVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNVITN
LSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIE
PPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSW
TENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRA
VALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIR
YYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASI
TLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKE
QLADARRDLKSAKADAKVLKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIAL
GTSKLNYLDPRISVAWCKKWGVPIEKIYNKTQREKXAWAIDMADETTSSSLSLRGRVL
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgagtggggaccatctccacaacgattcccagatcgaggcggatttccgactgaatgat
tctcataaacacaaagataaacataaagatcgagaacaccggcacaaagaacacaagaag
gacaaggagaaggaccgggaaaagtccaagcatagcaacagtgaacataaagattctgaa
aagaaacacaaagagaaggagaaaaccaaacacaaagatggaagttcagagaagcataaa
gacaaacacaaagacagagacaaggaaaaacgaaaggaggaaaagattagagcctctggg
gatgtaaaaataaaaaaggagaaggaaaatggcttttctagtccaccattgattaaagat
gaacctgaagatgatggctattttgctcctcctagagaggatataaagccattaaagaga
cctcgagacgaggatgatgctgattataaacctaagaaaattaaaacagaagataccaag
aaagagaagaaacgaaaactagaggaagaagaggatggtaaattgaaaaaacccaagaat
aaggataaagataaagataaaaaagttcctgagccagatagtaagaaaaagaagccgaag
aaagaagaggaacagaagtggaaatggtgggaagaagagcgctatcctgaaggcatcaag
tggaaattcctagaacataaaggtcctgtatttgctccaccatatgaacctcttccagag
aatgtcaagttttactatgatggtaaagtcatgaagctgagccccaaagcagaagaagta
gctacgttctttgcaaaaatgctcgaccatgaatatactactaaggaaatatttaggaaa
aatttctttaaagactggagaaaggaaatgaccaatgaagagaagaatgttatcaccaac
ctcagcaaatgtgattttacccagatgagccagtatttcaaagcccagacagaagctcgg
aagcagatgagcaaggaagagaaactgaaaatcaaagaggagaatgaaaaattactgaaa
gaatatggcttctgtgttatggataaccacagagagaggattgccaacttcaagatagaa
cctcctgggcttttccgtggccgtggcaaccaccccaagatgggcatgctgaagagaagg
atcatgcctgaggatataatcatcaactgtagcaaagatgccaaggttccttctcctcct
ccaggtcataagtggaaagaggtccgacatgataacaaggttacttggctagtctcctgg
acagagaacatccaaggttctattaaatacatcatgctgaaccctagctcacgaatcaag
ggtgagaaagactggcagaaatatgagactgctcggcggctaaagaagtgtgtggacaag
atccggaaccaataccgggaagactggaagtccaaagagatgaaagtccggcaaagagct
gtagctctgtacttcatcgacaagcttgctctgcgagcaggcaatgagaaggaggaagga
gaaacagcggacactgtgggttgctgctcacttcgtgtggagcacatcaatctgcaccca
gagttggatggtcaggaatacgtggtagagtttgacttcctgggaaaggactcaatcaga
tactataacaaagtccccgttgagaaacgagtttttaagaacttacaactatttatggag
aacaaacagcctgaggatgatctttttgatagactcaatactggtattctaaataaacat
cttcaggatctcatggagggcttgacagcgaaggtgttccgtacatacaacgcctccatc
acgctacagcagcagctaaaggaactcacagctcccgatgagaacatcccagcaaagata
ctatcttataaccgtgccaaccgagccgttgcaattctttgtaaccatcagagggcacca
ccaaaaacttttgagaagtccatgatgaacttgcaatctaagattgatgccaagaaggaa
cagctagcagatgcccggagagacctgaaaagtgctaaggctgatgccaaggtccttaag
gatgcaaaaaccaagaaggtggtagagtcaaagaagaaggctgtgcagagactggaggag
cagttgatgaagcttgaagtacaagccacagaccgagaggagaataaacaaattgctttg
ggaacctccaaactcaattatctggacccaaggatcagcgtggcttggtgcaagaagtgg
ggggtcccaattgagaaaatttacaacaaaacccagcgggagaagnttgcctgggccatc
gacatggctgatgagactacgagttctagcctgtccttgaggggcagggttctgtga
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