Phocoena sinus (vaquita): 116740112
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Entry
116740112 CDS
T07759
Symbol
SS18L1
Name
(RefSeq) calcium-responsive transactivator isoform X1
KO
K15623
protein SSXT
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03082
ATP-dependent chromatin remodeling
psiu05202
Transcriptional misregulation in cancer
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116740112 (SS18L1)
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
116740112 (SS18L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psiu03036
]
116740112 (SS18L1)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116740112 (SS18L1)
GBAF(ncBAF) complex
116740112 (SS18L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SSXT
Motif
Other DBs
NCBI-GeneID:
116740112
NCBI-ProteinID:
XP_032461248
Ensembl:
ENSPSNG00000013560
UniProt:
A0A8C9CBH0
LinkDB
All DBs
Position
15:complement(1586719..1616617)
Genome browser
AA seq
402 aa
AA seq
DB search
MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVY
LATIADSNQNMQSLLPAPPTQSLALGPGGLSQSGSGQGLHSQGSLSDAIGAGLPPSSLMQ
AQIGNGPNHVTLQQTSQSTLPTTSMSMSGSGHGSGPGYSHSGPASQSIPLQGQGAISSYV
SRANINMQSNPVSMLHQQAASSHYGTAQGGSQHYQGQSMAMMGQSGQAGSMMGQRPMAPY
RPSQQGSSQQYLGQEEYYGSEQYGHGQAASEPMSQQYYPDGHGDYAYQPASYTEQSYDRS
FEESTQHYYEGGNSQYSQQQAGYQQGTAQQQTYSQQQYPNQQSYPGQQQGYGPAQGAPSQ
YSSYQQGQGQQYGSYRASQTGPSAQQQRPYGYEQGQYGNYQQ
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtggccttcgcgtccgcccggccgagaggcaaaggggaggtcacgcagcaaacc
atccagaagatgctggacgagaaccaccacctgatccagtgcatcctggactatcagagc
aagggcaagacggccgagtgcacccagtaccagcagatcctgcaccggaacctggtctac
ctggccacgatcgcggattctaaccagaacatgcagtccctgctgcccgccccgccaacc
cagagcctggcgctgggccccggagggctgtcccagagcggctcgggccagggcctgcac
tcgcagggcagcctcagcgacgccatcggcgcgggcctgccaccatcctccctcatgcag
gcccagatcggcaacggtccgaaccacgtgaccctgcagcagacgtcgcagagcacgctg
cccaccacctccatgagcatgtccggcagcggccacggctcggggcccggctacagccac
tcgggaccggcctcgcagagcatccccctgcagggccagggcgccatcagcagctacgtg
tcccgggccaacatcaacatgcagtccaacccagtgtccatgctgcaccagcaggcagcc
tcgtcccactacggcacggcacagggcgggagccagcactaccagggccagtccatggcc
atgatgggccagagcgggcaggcgggcagcatgatggggcagcggcccatggcgccctac
cggccctcccagcaaggctcgtcccagcagtacctgggccaggaggagtactacggcagc
gagcagtacggccacggccaggccgcctcggagcccatgagccagcagtactaccctgac
ggacatggcgattatgcctaccagccggcgtcctacacggagcagagctatgaccggtcg
tttgaggagtccacgcagcactactacgagggcggaaactcacagtacagccagcagcag
gcggggtaccagcagggcacagcccagcagcagacgtactcccagcagcagtaccccaac
caacagagctaccccgggcagcagcaaggctatgggcctgcccagggcgccccctcgcag
tactccagctaccagcagggacaaggccagcagtacggaagctaccgagcgtctcagacg
ggcccgtccgcccagcagcagcggccttacggctacgagcagggccagtacggaaattac
cagcagtaa
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