Phocoena sinus (vaquita): 116740173
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Entry
116740173 CDS
T07759
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03440
Homologous recombination
psiu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116740173 (PALB2)
03460 Fanconi anemia pathway
116740173 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116740173 (PALB2)
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
116740173 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
116740173 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
116740173
NCBI-ProteinID:
XP_032461403
Ensembl:
ENSPSNG00000015322
LinkDB
All DBs
Position
15:complement(67732290..67756885)
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AA seq
1165 aa
AA seq
DB search
MRGQLGAAGLCLIGTASLLSDASFPPAQFCLVFFFFQLKEKLAFLKREYSKTLARLQRAQ
RAEKFKNSIKRTVEGQDSSLQQEVSTQLTDTEPKNKVSPCDTLQINTHVDKETGEKTPIT
LDLEPESFSPGRIPAEGSCIQRSDDIQEHFPYGVSGPDGKKRQSKLLGRRKKQERTLTSQ
ERESFFDIDSLILSGKRLKEQEEINRENPKTPVTEIRTYPSSPKSDIPDSPAPVTGTNVG
SVLILPNAKPQRDVDALLRGNNFPRVTTLPLHVPSVSSSGQHLENEPPKSNCELTTHSLE
NISPASPVNLETQNKKMTVFTDNPEVNKSISASDRPPRSPNLEAGNSYSINELTYNNLGA
NENQNLKEQNHTEMSFKSPNNALGGRNESRLEKEVLSQSKSLSLEVISPVSTENQTHSCT
VLEGLLFPAEYYVRTTRRMSDCQRKVALEAVIQSHLDVRKKGFKNKNKESAKKLNVSNEE
TNQSEIMMSDTYAEQPSSKSPQKLLSLTEVSSPAGPTKNDFPRKAVTQPSGRKRKGRRKS
VCTPLLDHHELLLPTSGTSGVNRSKEEVALHKDQNGKAIIHEKEGHCQKEDFLSYSNYVY
LSSDDDAFSSPVHKSEMLNLKHLSPFLKITDFQLPDEDFGPLKLEKLKSCSEKLMEPFGS
KIYGEGHLKGGNCVAVEQLIPKQITIEKEDGKEELIILPGKAHPKMPNQKSQPQEKGLSS
SILLFTPVNTVASDDNDRPTADLCSPAFPVLGSTPAFGSQAHGEKMSAEVVGQACSTPQL
SHLKATVSLASDHKQFWSSPPKLDSSLHVAGREGEPSRDCDSGPQATALPIESSTYKENQ
LRGNTCQESRKHSTEQTEIADVPACDSLNPGTLQLVSKLKNPSGSCSVDVSAMWWEIAGF
KERCIITACEYVVSLWKPLDTWQWEKIYSWHFAEVPVLQIVLVPDVCNLVCVALGNLEIR
EIRALLCSPDGKSEKQVLLSSGNIKAVLGLTKRRLVSSSGTLFDQQVEITTFAEDGGNLK
TGQLLKKMHIGDSYQASVCHKAYSEMGLLFVVLSHPCAKESKLLGSPVFQLIVINPKTTL
SVGVMLYCLPQGQAGRFLEGDVKDHFAAAVLTSGTIAIWDLLLGHCTALLPPVSDQNWSF
VKWSGADSHLLAGQKDGNIFVYRYY
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgaggggccagctgggtgccgcaggcttgtgtctgataggcactgcatcccttctctct
gacgcctcctttccacctgctcagttttgtttggtgtttttcttcttccagttgaaggaa
aaattagcattcttgaaaagggaatacagcaagacactggcccgccttcagcgtgcccag
agagctgagaagtttaagaattccattaagagaacagtagaaggacaagattcctcgctc
cagcaggaagtttcaacgcagctaactgacacagaacctaaaaataaagtatctccttgt
gacacgttgcaaatcaacacccacgtcgataaagaaactggagaaaagacacctatcaca
cttgaccttgagcctgagtcctttagccctggacgaatcccagcagaaggatcatgcata
caaagatcagatgatatccaagaacattttccgtatggggtcagtggccctgatggtaag
aaaaggcagagtaagctgctagggagaagaaagaaacaggagagaacacttacttcacaa
gagagagagtctttctttgatattgattcgctcatactctctggaaaaagactaaaggaa
caggaagaaatcaatagagaaaatcctaagacacctgtaactgagataagaacttacccg
tcaagtcctaagtctgacattcccgattctccagcaccagttacaggaactaatgtaggg
agtgtattaattctgccaaacgccaaaccgcagagagatgttgatgcactcttaagagga
aataatttccccagggtgactactcttcctttgcatgttccatcagtcagcagtagtggt
cagcacctcgagaatgagcctcctaaaagtaactgtgaacttactactcacagtttagaa
aacattagccctgcttcgcctgtaaacttagagacacaaaacaaaaaaatgactgtcttt
acagataacccagaggtaaacaaaagtataagtgcaagtgaccggccgcctagaagccct
aacttggaggcaggtaattcatattctataaatgaactcacctacaataacttaggggca
aatgaaaaccaaaacttaaaagaacaaaatcacacagagatgtcttttaaatctcccaat
aatgctcttggtggtagaaatgaaagtcgtctggaaaaagaagttctaagtcagtctaag
agtcttagcctagaagtaatttctcccgtttctacagaaaatcaaacacattcttgcaca
gtgcttgaaggccttctatttcctgcagaatattatgttagaacaacacgacgcatgtca
gattgccagaggaaagtagccctggaggctgtaatacaaagtcatttggatgtcagaaaa
aagggctttaaaaataaaaataaggaatctgctaaaaagttaaacgtttccaatgaagaa
actaaccaaagtgaaattatgatgtcggacacgtacgcagaacaaccaagttcaaaaagt
cctcagaaacttctctcgttaactgaagtcagctctcccgctggccccactaaaaatgac
tttcctaggaaggcggttacccagccatctggtagaaaacgcaaaggaagaagaaagtca
gtctgcacccctctgttagatcaccatgaactacttttgccaacttctggcacatcaggt
gttaataggtccaaggaagaagttgccttgcacaaagatcagaatggaaaagcaattatt
catgagaaggaaggtcattgtcaaaaagaggacttcctttcttacagtaattacgtgtat
ttatcttcggatgatgatgctttcagttctccagttcataagagtgaaatgctaaattta
aagcatctgtcgccttttctcaaaatcacagactttcagttacctgatgaagactttggg
cctcttaagcttgaaaaactgaagtcttgctcagaaaagttgatggagccttttggatca
aaaatatatggagagggacatcttaaagggggaaattgtgttgctgtggagcaactgatc
cctaaacaaatcactatagagaaggaggatgggaaagaggaactgatcatcctgccagga
aaggcacatcctaaaatgccaaaccaaaaaagccagcctcaggagaagggcctttcttca
tccattttacttttcactcctgtaaatactgttgcatctgatgataatgacagaccgaca
gcagacctgtgctcacctgctttccccgtcttaggctctactccagcgtttggctcccaa
gcccatggagaaaagatgtctgcggaggttgttggacaagcttgctctacaccccagctt
tctcacttaaaagccacagtcagccttgctagtgaccataaacaattttggagcagccca
ccaaaattagatagcagcctgcatgtggcaggaagggaaggagagccttcccgtgactgt
gactctggtccccaagcaacagctctacccatcgagtcatcaacctacaaagaaaatcag
ctccgtggaaacacgtgccaggaatcacggaaacattccactgaacagactgaaatagca
gacgttcctgcttgtgatagcttaaacccaggcaccctacaattggtttcaaagttaaag
aatccttcaggttcctgttctgtggatgtgagtgccatgtggtgggaaatagctggtttc
aaagagcggtgtatcataactgcttgtgaatacgtagtttctctttggaaacctctggat
acttggcagtgggaaaaaatttattcctggcacttcgcagaggtcccagtattacagata
gttctagtgccggatgtttgtaatcttgtgtgtgtggctttgggaaatttggaaatcaga
gaaatcagggcactactttgttctcctgatggtaaaagtgaaaagcaagtgctcctgagt
tctggaaatataaaagctgtgcttggcctgacaaagaggaggctagtcagtagcagtggg
accctttttgatcaacaagtagaaatcacgacgtttgcagaagatggagggaatttaaaa
actggtcaactcctgaaaaagatgcacattggtgattcctaccaagcttcagtctgtcac
aaagcttattctgaaatggggctcctgtttgttgttctgagtcacccttgtgccaaagag
agcaagttgttgggaagccctgtgtttcagctgattgtcattaacccaaagacgaccctg
agtgtgggcgtgatgctctactgccttcctcaagggcaggctggaaggttcctggaaggt
gacgtgaaagatcattttgcagcagcagtattaacttctggaaccattgccatttgggac
ttactcctaggtcattgcactgctctccttccacctgtctctgaccagaactggtctttt
gttaaatggtcaggtgcagattctcatttgctggctggacagaaagatggaaatatattt
gtataccgctactactga
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integrated database retrieval system
