Phocoena sinus (vaquita): 116740263
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Entry
116740263 CDS
T07759
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
116740263 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psiu04121
]
116740263 (SLX4)
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116740263 (SLX4)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
116740263 (SLX4)
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
116740263 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
116740263
NCBI-ProteinID:
XP_032461609
Ensembl:
ENSPSNG00000005399
LinkDB
All DBs
Position
15:complement(52638701..52660602)
Genome browser
AA seq
1787 aa
AA seq
DB search
MMDESDDDFKELCASFFQRVKKNGPKEVSGERKTQKASNNIQIRSKLKRTKPPASKSKTL
QGPAERKTRSGSQVLRTQKQGAPKWPESELAPPENGEGGVHASAVLQDSAWSTQTEAAPD
SRSQPPPSCLTAMVPSPSKPRAAELVLQRMQQFKRADPERLKHGSEGCSLEAALEENVPK
GPQEMMAGNGSGPRLPATESDAAVALALQHEFGLERASAHNDSLEEKGLFFCQICQKNLS
AMTVTRREQHVNRCLDEAEKALRPSVPQIPECPICGKPFLTPKSRISHLKQCAVKMEVGP
QLLLQAVRLQTAQPEGASGTLASSLRDHAGGLKRKGATAKKEPQKRRKVAKPEAPSEDLL
VAMALSRSEMEQKAVPAALRLGNAFSERTRPGAALEKKSRKKKAPVTPPQLLVQDVETTG
RQMEDRVAQLLEEELELSGTPPLPASRIFKEELEKSRRGLRPPGGKQNFLWEGSALTGAW
ALESFYTASLVPPLVPQRPTEGLTQEPMLPLELPEKPEPGVQTPLAVHGTRPVGHSPLSP
APSASQREHQALQDLLDLAGEGLSASPWPCSGGPAGSGGATGMDLSPSSLPLTGFVLPDK
EKCLERSSQASAAVAALPLSFQLALGLLVADFGAMVNNPHLSDIQFQMDGGEVLYAHKFV
LYARCPLLMQHVNSEGFFAIEDGDMRTQRVLLSDVSAEAARVFLRYLYAADTALTPHLAP
DLSSLAHRFGVTELVHLCEQVPVPMDAEGGQQKEQEDEDCESRVETFQELLRSVWWGEEE
EAEALLKSEGGEEDREKVNEAEMEEIYEFAATQRKLLQWEKAPAMEEEADQLREDGPVSG
GILTSVHNKEQSENAEQMESSGQGRDEAPDKWKNMRQSMLLSPGDRGLDREENAESPEEA
LALPYSSSPARGQAEKQESTFLCSVDVDDEQSFSSPQAGYPEPSQMTSDRKEGNCTVWER
EIESSHPPARQQAPPSHSPFFPSQPHQGRSPCRPHLRSHHTSDLSLPTPQLQGTASRVAS
QNSSLKPKSARSLPMSHKDPGQKDKECSSVLEHRGKGVLISPEKSPPMDLNQSEPGCLSA
RSQNSPSSVNREDEVILLLDSDEELELEQTKIKSGLNGPSEERKVLEVSTRSSELFSIID
LDAEQEPCQSPPGREPTLQQEVEGPLGNRGSVGGRGTPQLFCDPKISGDEDSTTDTSWLV
PATPLASRSRDCSSQTQITGLRSRPSADPLAQPKPRALLENRDEPEAMSKFSVIVPQTSS
SLLGPVAPGSPDSRRQVCRSPSSPHPRCHQYFSPLAPRPGSGGLADLTGQFQRHPPPAPS
PGVQATASEVVEVEDSEEEQEVASRKASNIPLPDSDPLIPADNWCWHVEPLSPIPIDHLN
LEWTGPLSTSSPGSRVEGALDSGDCRSPALLGTTPIRGSCTGQRKAQEKSPGAGSPGSSR
LSFLNSALWEDWDGEQKPPEALPLPQTPSADGAQKLQELQTPKGGNRKKNLPPEVPITPM
PRYSIMETPVLKKELDRFGVRPLPKRQMVLKLKEIFQYTHQILESDSEEESQSSQVPLEA
PCSQTYTTKTSKASRAAGRTQLEAISGSLPQRSKGPAKTKGPQHQKTQPGGRVPALSTSP
AKEGPPGPDGDTQLLASQESMATSVDSSDSSCSSQSSSCDFGAALESAGEDEEDEEDVSA
SQAAIQVAATEEAVRHYICSKPALYRKVLLYQPLELAELQAELKHQGIHVATGKLLDFLD
TQCITFTTAAARKAKPERKRRQPMSKKTGVRTRGPVPRPQPQAISSL
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgagtcagacgatgactttaaggaactctgtgccagctttttccaaagggtg
aaaaagaatggccccaaggaagtgtcgggggaaaggaagacacaaaaggcctcaaacaac
atccagataagaagcaaactgaaaaggaccaaaccacctgcttctaagagcaaaaccctt
caaggccctgctgagaggaaaactcgctctggcagccaggtcctgcggactcaaaagcaa
ggagcacccaagtggccagagagtgaactggctccccctgaaaatggggagggaggcgtg
catgcttctgctgtgctccaggacagtgcatggagcacccagacagaggccgctcctgac
agccgctcccagccccctccttcctgtctgactgcgatggtgcccagtccctccaaaccc
cgggcggcagagctggtgctacagcgaatgcagcagttcaagagagcagaccccgagcgt
ttgaaacacggttcagaagggtgctccctagaggctgcacttgaagaaaacgtcccaaag
ggccctcaagagatgatggcagggaacgggtctgggcccaggctccctgccacagagagc
gacgctgcagtggccttggccctccagcatgagtttgggctagaacgggcatccgcacac
aacgacagcctggaggagaaggggttgttcttttgccagatctgtcaaaagaacctctcg
gctatgaccgtgacacggagggagcagcacgtgaaccggtgcttggacgaggctgaaaag
gcactgagaccttctgtgcctcagatccctgaatgcccaatttgcggcaagccatttctc
accccaaagagcagaatcagtcacttgaaacagtgtgcggtgaagatggaggttggcccg
cagctcctgctccaggctgtgcggctgcagacagctcagcccgagggggcctctggcaca
ctggcatcaagcctcagggatcacgctggaggtctgaagcggaagggagccactgccaag
aaggagccgcagaagaggcggaaggtcgccaagcccgaggcgccgtccgaggacctgctg
gtggccatggctctgtcccggtccgagatggagcagaaggctgtgccggcggcactcagg
ctgggaaacgctttttctgagaggacgagaccgggagcagctctagagaagaaaagtcgc
aagaagaaagcccccgttacgcccccgcagttgttagtccaggacgtggagaccacaggg
agacagatggaggatcgcgtggcccagctcttggaagaggagctggagctgtctggcacg
ccaccgcttcctgcgagcagaatttttaaggaagagctggaaaagagcaggcggggtctt
cgaccacctggaggaaagcagaactttctgtgggagggcagcgccctgaccggggcctgg
gctctggaatccttctacacggccagcctggtccctcccctggtgccccagcggcccacc
gagggcctcacacaggagcccatgctgccactggagctgcctgagaagccagagcctggc
gtgcaaacaccccttgccgtccatggcacccgccctgtgggccatagccccctgagccca
gcgccctccgccagccagagggagcatcaggccctgcaggacctcctggacttggcagga
gaggggctgagcgccagcccgtggccctgcagtgggggcccggccggctcaggaggggcc
acaggaatggacttgtcgcccagcagccttccactgactgggtttgtcctgccagacaag
gagaagtgcctggagaggagcagccaggcttcggcggcagtggccgctctccccctctca
tttcagctcgccctcggtttgctggtggccgacttcggtgccatggtcaacaacccacac
ctcagcgacatccagtttcagatggacggtggggaggtgctttatgcccacaagtttgtg
ctctatgcccgatgcccacttctcatgcagcacgtaaacagtgaaggcttctttgcaata
gaagatggtgacatgaggacccagcgcgttctgctgagtgacgtcagcgctgaggccgcc
cgggtgttcctgcgttacctctatgctgcggacactgcccttactccccacctggcccct
gacctgagctctctggcccacaggtttggcgtgactgagcttgttcacctgtgcgaacag
gtgcccgtcccgatggatgcagagggtggacagcagaaggagcaggaagacgaggattgt
gaaagcagagtggagactttccaagaactcctgcggtcggtgtggtggggtgaggaggag
gaagcagaggctctgctgaaatccgagggtggagaagaagacagagaaaaggtgaatgag
gcagaaatggaagaaatttatgaatttgcagctactcagcgaaagctgctccagtgggag
aaagctccagcgatggaggaagaagctgaccagctcagggaggacggtccagtttctggg
ggaatcctcacaagcgttcacaataaagaacagtcagaaaatgcagagcagatggaatca
tctgggcaaggaagagatgaggccccagacaaatggaaaaacatgagacagtccatgctc
ctgtcccccggggaccggggtttggacagggaggagaacgcagagtccccagaggaagca
ctggctcttccctactcttccagccctgcccggggtcaagcagagaagcaggaaagcacc
tttttgtgctcagttgatgttgatgatgaacagtccttttcatcgcctcaagccggatac
cctgaaccctcccagatgacaagtgatcgcaaggaaggaaactgcaccgtatgggaaagg
gagatagagagttcccatccccctgctcgccagcaggcacctccctcacactcacccttc
ttcccatcacagccccatcaaggcaggagtccctgccggccacatcttcgttctcatcac
accagtgacctgtccctgccaacaccccagttgcagggcacagcttccagggtggcctcc
cagaactcatcactgaagccaaagagtgccagaagccttcccatgtcacataaggatcca
ggccagaaagacaaggaatgtagttccgtgttggaacacagaggtaaaggggtcctgatc
tccccagaaaagtcaccacccatggatctaaaccagtcagaacctggctgcttgagtgcc
aggtctcagaactctccatccagcgtgaacagagaagatgaggttatccttttattggat
tcagatgaagagctggagctggaacaaaccaaaataaagtcaggtttgaatggtccctcg
gaagaaaggaaagttcttgaagttagcaccaggtcctctgagctgttttccatcatcgac
ctcgatgcagagcaggaaccttgccaaagcccaccaggaagagagcccacgctacagcag
gaggtggagggaccgctggggaaccggggctctgtcgggggcagagggaccccccaactg
ttctgcgaccccaagatcagtggcgacgaggacagcacgacagatacctcgtggctggtg
cctgccaccccactggctagcagaagccgtgactgttcgtcgcagacccaaatcacaggc
ctcaggtccaggccttcagcagacccactggctcagcccaagcccagggccctgttagag
aacagggatgaaccggaagccatgagtaagttttcggtcatcgtgcctcagacatcatcc
tcactcctgggccctgtcgctcccggaagccctgacagcagaaggcaggtctgcagaagc
ccgtccagtccccaccccagatgccaccagtacttttctcctctggctccccgtcccggc
tcaggaggcctcgctgacctcactgggcagttccagaggcacccgccgcctgcgccgagc
ccaggggttcaggccactgcgagtgaagtggtggaggttgaggacagtgaggaggagcag
gaggtggcctcccggaaggcgagcaacatccccctgccggatagtgaccccctgattcca
gccgacaattggtgttggcacgtggagcccctctcaccaattccgatcgaccacctgaac
ctcgagtggaccggccccctgagcaccagtagccctggcagtagggtggagggggccctg
gacagcggtgactgccgctccccagcactgctgggcaccacccccatccgaggaagctgc
actggccagaggaaggctcaagagaaatcccctggggccggctcccctgggagcagcagg
ctgagctttctgaactcagctctgtgggaggattgggatggagaacagaagcccccagag
gctcttcctctgccccagacaccgagcgcggatggagcccagaaactgcaagagttacag
acaccaaaaggtggtaaccggaagaagaacttgccccccgaagtgcccataaccccaatg
ccaaggtattccatcatggagaccccggtgctgaagaaagaactggacaggtttggggtc
cgccctctgcccaaacgccaaatggtcctgaaactgaaggagatattccagtacactcac
cagatactggagtcagactctgaggaagagagccagtcctcacaggtgcccttggaggct
ccttgcagccagacttacaccaccaagacctctaaggcttcaagggcagctggccgcacc
cagctggaggccatttctggctcccttccccaaaggtccaagggacctgctaagaccaag
ggcccccaacatcaaaagacacagcctggtggaagggtccctgccctgagcacgtcacca
gccaaggagggccctccaggccctgatggtgacacccagctactggcctcccaggaatcc
atggccacctctgtagacagcagtgacagctcctgcagctcacaaagttcttcctgtgac
tttggagcggccttggagtctgcaggagaagatgaggaggacgaggaggatgtcagtgct
tcacaggcggccatccaggtagcggccacagaggaggccgtgaggcattacatctgctcc
aagccagccctctaccgcaaggtcctgctgtaccagcccttggagctggcagagctacag
gccgagctgaagcatcaaggcatccacgtggccacggggaagctgctggacttcctagac
acccagtgcatcaccttcaccacagctgccgcccgcaaggcgaagcctgagaggaagaga
cggcagcccatgagcaagaagacgggggtcagaacccgcgggcctgtcccccgcccccaa
ccccaggccatcagcagcctgtga
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integrated database retrieval system
