KEGG   Phocoena sinus (vaquita): 116740265
Entry
116740265         CDS       T07759                                 
Symbol
RAE1
Name
(RefSeq) mRNA export factor
  KO
K14298  mRNA export factor
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03013  Nucleocytoplasmic transport
psiu05014  Amyotrophic lateral sclerosis
psiu05164  Influenza A
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    116740265 (RAE1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    116740265 (RAE1)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    116740265 (RAE1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psiu03019]
    116740265 (RAE1)
   03036 Chromosome and associated proteins [BR:psiu03036]
    116740265 (RAE1)
Messenger RNA biogenesis [BR:psiu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     116740265 (RAE1)
Chromosome and associated proteins [BR:psiu03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    116740265 (RAE1)
SSDB
Motif
Pfam: Beta-prop_EML_2 WD40 WDR55 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_IFT140_1st NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_Nup120_160 WDR90_beta-prop_4th Beta-prop_SPT8
Other DBs
NCBI-GeneID: 116740265
NCBI-ProteinID: XP_032461615
Ensembl: ENSPSNG00000018876
UniProt: A0A8C9CJ39
LinkDB
Position
15:complement(5585258..5605025)
AA seq 431 aa
MRNVSAVIRAVSSTGVRRPQAPGIPVRATSLTASSAPERGRRFPSSFRSPPPASLRGATL
RAKMSLFGAASGFGTGGASMFGSAAADNHNPMKDIEVTSSPDDSIGCLSFSPPALPGNFL
IAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNS
NQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCAD
MIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE
GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRF
SFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRN
AAEELKPRNKK
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgcgcaatgtctccgccgtaattagggcggtttcctcgaccggcgtgagaagacctcag
gctcccgggattcctgttcgtgccacctcgctaaccgcctcctccgcgcccgagcggggc
cgcaggttcccgagctctttccgctccccgccgccggcttctcttcgcggcgcgactctc
agggccaagatgagcctgtttggagcagcctccgggtttggcactgggggagccagcatg
tttggcagcgccgccgcagataatcacaaccctatgaaggatattgaagtaacatcctct
cctgatgatagcattggttgtctatcttttagcccgccagccttgccggggaacttcctt
attgcagggtcgtgggctaacgatgttcgatgctgggaagttcaagacagtggacagact
attccaaaagcccaacagatgcacactgggcctgtgctagatgtctgctggagtgatgat
gggagcaaagtatttacggcgtcatgtgataaaactgccaaaatgtgggacctcaacagt
aaccaggcgatacagatagcacagcacgatgctcctgttaaaactatacactggatcaaa
gcaccaaactacagctgtgtgatgaccgggagctgggataagactttgaagttttgggat
acacgatcatcaaatcctatgatggttttacaactccctgaaaggtgttactgtgctgac
atgatatatcctatggctgtggtggcaactgcagagaggggactgattgtctatcagtta
gagaaccaaccttctgagttcaggaggatagaatctccactgaagcatcagcatcgatgt
gtggctatttttaaagacaaacagaacaagccgacaggttttgccctgggaagcattgag
gggagagttgccattcactacatcaaccccccaaatccggccaaagataacttcaccttt
aaatgtcatcgatctaacggaaccaacacttcagctcctcaggacatttacgcggtaaat
ggaattgcgttccatcctgttcatggcacccttgcaactgtgggatctgatggtagattc
agcttttgggacaaagatgccagaacaaaactaaaaacttcggaacagctagatcaaccg
atatcggcttgctgcttcaatcacaatggaaacatatttgcatatgcttccagctacgac
tggtcaaagggacatgaattttataacccccaaaagaaaaattacattttcctacgtaac
gcagccgaagagctaaagcccaggaataagaagtag

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