Phocoena sinus (vaquita): 116740404
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Entry
116740404 CDS
T07759
Symbol
SDC4
Name
(RefSeq) LOW QUALITY PROTEIN: syndecan-4
KO
K16338
syndecan 4
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04512
ECM-receptor interaction
psiu04514
Cell adhesion molecule (CAM) interaction
psiu04820
Cytoskeleton in muscle cells
psiu05205
Proteoglycans in cancer
psiu05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116740404 (SDC4)
04514 Cell adhesion molecule (CAM) interaction
116740404 (SDC4)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116740404 (SDC4)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
116740404 (SDC4)
09166 Cardiovascular disease
05418 Fluid shear stress and atherosclerosis
116740404 (SDC4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
psiu00535
]
116740404 (SDC4)
Proteoglycans [BR:
psiu00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
116740404 (SDC4)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
116740404
NCBI-ProteinID:
XP_032461948
Ensembl:
ENSPSNG00000018486
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Position
15:15281076..15301590
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AA seq
201 aa
AA seq
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MAPARLLALLWLLVGALAVAAESIRETEVIDPRDLLEGRHFSGDLPDDEDVGVPGQEPHD
FELSGSGDLDDSEDTPIXPEVIHPSVPLDNHIPEKTGLGSRVPTEPKELEENEVIPKRMS
PFGGDEDVSNKVSMSSTAQGSNIFERTEVLAALIVGGGVGILFAIFLXLLLVYRMKKKDE
GSYDLGKKPIYKKAPTNEFYA
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
atggcccccgcccgcctgctcgcgctgctgtggctcctcgtgggcgcccttgccgtcgcc
gccgagtcgatccgagaaactgaagtcatcgacccccgagacctcctagaaggccgacac
ttttccggagacttaccggacgacgaggatgttggggtacctgggcaggagccccatgac
tttgagctgtctggctctggagatctggatgactcagaggacacccctatcnttccggaa
gtgattcatccctcggtgcctctagataaccacatccctgagaagacagggcttgggagc
cgggtccccaccgaacccaaggaactggaggagaatgaggtcatccccaagaggatgtca
ccctttggtggggacgaggatgtgtccaacaaggtgtccatgtccagcacagcccagggc
agcaacatctttgagaggacagaggttctggcagctctgattgtgggcggtggcgtgggc
atcctctttgccatcttcctgntcctgctgctggtgtaccgcatgaagaagaaggacgag
ggcagctacgacctgggcaagaaacctatctacaaaaaagcccccaccaacgagttctac
gcctga
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