Phocoena sinus (vaquita): 116740675
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Entry
116740675 CDS
T07759
Symbol
RBM39
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psiu03041
]
116740675 (RBM39)
Spliceosome [BR:
psiu03041
]
Common components
Common spliceosomal components
General mRNP proteins
116740675 (RBM39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RBD_DEAH11
RRM_7
POP1_C
IHO1
Motif
Other DBs
NCBI-GeneID:
116740675
NCBI-ProteinID:
XP_032462374
Ensembl:
ENSPSNG00000008851
UniProt:
A0A8C9BVL2
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All DBs
Position
15:23615415..23645455
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AA seq
530 aa
AA seq
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MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL
SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
ARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQP
LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS
IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgatattgatattgaagcaatgcttgaggctccttacaagaaggatgagaac
aagttgagcagtgccaacggccatgaagaacgtagcaaaaagaggaaaaaaagcaagagc
agaagtcgtagtcatgaacgaaaaagaagcaaaagtaaggaacggaagcgaagtagagat
agagaaaggaaaaagagcaaaagccgtgaaaggaagcggagtagaagcaaagaaaggaga
cggagccgttcaagaagtcgagatcgcagattcagaggccgttacagaagtccttactcc
ggaccaaaatttaacagtgccatccgaggaaagattgggttgcctcatagcatcaaatta
agcaggcgacgctcccgaagcaaaagtccattcagaaaagacaagagcccagtgagggag
cctattgataatctgactcctgaggaaagagatgcaaggaccgttttctgcatgcagctg
gcagcaagaattcggccaagggatttggaagagtttttctccacagtaggaaaggttcga
gatgtgaggatgatttctgatagaaattcaagacgttccaaaggaattgcttatgtggaa
tttgtcgatgttagctcagtgcctctagcaataggattaactggccagcgggttttagga
gtgccaatcatagtacaagcgtcacaggcagaaaaaaacagagctgcagcaatggcaaac
aatctacagaagggaagtgctggacctatgaggctctatgtgggctcgttacattttaac
ataactgaagatatgcttcgggggatctttgagccttttggaaggattgaaagtatccag
ctcatgatggatagtgaaacaggtcgatccaaggggtatggatttattacgttttctgat
tcagaatgtgccaagaaagctttggaacaacttaatggatttgagctagcaggaaggccg
atgaaagttggtcatgttactgaacgtactgatgcttccagtgctagctcatttttggac
agtgatgaactggaaaggactggaattgacttgggaacaactggtcgtctccagttaatg
gctaggctcgcagagggtacaggcttgcagatcccaccagcagcacagcaggctttgcaa
atgagtggctctctggcatttggtgctgtggcagaattctcttttgttatagatttgcaa
acaagactttcccaacagactgaagcttcagcattagctgcagctgcctctgttcaacct
cttgcaacacagtgtttccaactctctaacatgtttaaccctcaaacagaagaagaagtt
ggatgggatacagagattaaagatgatgtgattgaagaatgtaataaacatggaggagtt
attcatatttatgttgacaaaaattcagctcagggcaatgtgtatgtgaagtgcccatca
attgctgcagccattgctgctgtcaatgcattgcatggcaggtggtttgctggtaaaatg
ataacagcagcgtatgtacctcttccaacttaccacaacctctttcctgattccatgaca
gcaacacaactactggttccaagtagacgatga
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